myRT

myRT report for GCA_003145165.1_ASM314516v1

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Seq: NBCD01000012.1 Escherichia coli strain Win2012_WWKa_OUT_26 Cont012, whole genome shotgun sequence (38116 bp)
Overview 1 RT 1: 32175-36721 bp Neighborhood of RT #1 [32175, 36744] RVT-Retrons PBP2_CrgA_like_5 XdhC Feature: gene Location: 32175-32369 bp Feature: gene Location: 32652-33620 bp Feature: gene Location: 33607-34539 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 33709-34300 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 33709-34300 bp Feature: gene Location: 35399-35809 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 35471-35783 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 35471 -35783 bp Feature: gene Location: 35788-36744 bp Feature: domain Description: XdhC Location: 35866-36721 bp Feature: domain Description: XdhC Location: 35866-36721 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PBP2_CrgA_like_5 (cd08474), XdhC (COG1975)

Seq: NBCD01000092.1 Escherichia coli strain Win2012_WWKa_OUT_26 Cont092, whole genome shotgun sequence (10966 bp)
Overview 1 RT 1: 2-7548 bp Neighborhood of RT #1 [2, 7550] PHA00430 Peptidase_S74 APC_N_CC RVT-UG17 SLATT_5 prfC Feature: gene Location: 2-3085 bp Feature: domain Description: PHA00430 Location: 8-326 bp Feature: domain Description: PHA00430 Location: 8-32 6 bp Feature: domain Description: Peptidase_S74 Location: 2654-2801 bp Feature: domain Description: Peptidase_S74 Location: 2 654-2 801 bp Feature: domain Description: APC_N_CC Location: 2954-3077 bp Feature: domain Description: APC_N_CC Location: 2 954-3077 bp Feature: gene Location: 3381-4751 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 3609-4215 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 3609-42 15 bp Feature: gene Location: 4729-5433 bp Feature: domain Description: SLATT_5 Location: 4891-5401 bp Feature: domain Description: SLATT_5 Location: 4891-5401 bp Feature: gene Location: 5964-7550 bp Feature: domain Description: prfC Location: 5982-7548 bp Feature: domain Description: prfC Location: 5982 -7548 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA00430 (tail fiber protein), Peptidase_S74 (pfam13884), APC_N_CC (pfam16689), RVT-UG17, SLATT_5 (pfam18160), prfC (TIGR00503)

Seq: NBCD01000148.1 Escherichia coli strain Win2012_WWKa_OUT_26 Cont148, whole genome shotgun sequence (18188 bp)
Overview 1 RT 1: 5508-8494 bp Neighborhood of RT #1 [5508, 8494] RVT-GII GIIM RVT-GII Feature: gene Location: 5508-5693 bp Feature: gene Location: 5866-6036 bp Feature: gene Location: 6199-6852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6202-6610 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6202-6610 bp Feature: domain Description: GIIM Note: maturase Location: 6658-6850 bp Feature: domain Description: GIIM Note: maturase Location: 6658-6850 bp Feature: gene Location: 6825-7259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7017-7233 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7017-723 3 bp Feature: gene Location: 7428-7625 bp Feature: gene Location: 8168-8494 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)