myRT

myRT report for GCA_003145295.1_ASM314529v1

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Seq: NBCZ01000029.1 Escherichia coli strain Sum2013_WWKa_OUT_39 Cont029, whole genome shotgun sequence (14113 bp)
Overview 1 RT 1: 797-3865 bp Neighborhood of RT #1 [797, 3903] RVT-GII RVT-GII RVT-GII YhhI PLN02240 Feature: gene Location: 797-1018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 962-1007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 962-1 007 bp Feature: gene Location: 1024-1164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1027-1159 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 027-1 1 59 bp Feature: gene Location: 1344-1604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1350-1581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 350-1 581 bp Feature: gene Location: 2571-2759 bp Feature: domain Description: YhhI Location: 2580-2742 bp Feature: domain Description: YhhI Location: 2580-2742 bp Feature: gene Location: 2848-3903 bp Feature: domain Description: PLN02240 Location: 2854-3865 bp Feature: domain Description: PLN02240 Location: 2854-3865 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, YhhI (COG5433), PLN02240 (UDP-glucose 4-epimerase)

Seq: NBCZ01000074.1 Escherichia coli strain Sum2013_WWKa_OUT_39 Cont074, whole genome shotgun sequence (177669 bp)
Overview 1 RT 1: 61568-67044 bp Neighborhood of RT #1 [61568, 67088] Prim_Zn_Ribbon COG3378 RVT-Retrons TIR_2 Pox_D5 COG3943 Feature: gene Location: 61568-63901 bp Feature: domain Description: Prim_Zn_Ribbon Location: 61658-61766 bp Feature: domain Description: Prim_Zn_Ribbon Location: 61658-61766 bp Feature: domain Description: COG3378 Location: 62375-63890 bp Feature: domain Description: COG3378 Location: 62 375-63890 bp Feature: gene Location: 64178-64312 bp Feature: gene Location: 64488-66119 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 64803-65400 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 64803-65400 bp Feature: domain Description: TIR_2 Location: 65724-66081 bp Feature: domain Description: TIR_2 Location: 6572 4-66081 bp Feature: gene Location: 66357-66509 bp Feature: domain Description: Pox_D5 Location: 66360-66483 bp Feature: domain Description: Pox_D5 Location: 66360-66483 bp Feature: gene Location: 66942-67088 bp Feature: domain Description: COG3943 Location: 66945-67044 bp Feature: domain Description: COG3943 Location: 66945-67044 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Prim_Zn_Ribbon (smart00778), COG3378 (Phage- or plasmid-associated DNA primase ), RVT-Retrons, TIR_2 (pfam13676), Pox_D5 (pfam03288), COG3943 (Uncharacterized conserved protein )

Seq: NBCZ01000084.1 Escherichia coli strain Sum2013_WWKa_OUT_39 Cont084, whole genome shotgun sequence (13109 bp)
Overview 1 RT 1: 8370-13089 bp Neighborhood of RT #1 [8370, 13100] COG2085 PHA02517 RVT-GII GIIM PHA02517 HTH_38 Tra8 Feature: gene Location: 8370-8783 bp Feature: domain Description: COG2085 Location: 8469-8616 bp Feature: domain Description: COG2085 Location: 8469-8616 bp Feature: gene Location: 8949-9113 bp Feature: domain Description: PHA02517 Location: 8952-9042 bp Feature: domain Description: PHA02517 Location: 8952-9042 bp Feature: gene Location: 9278-10801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9551-10283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9551-10283 bp Feature: domain Description: GIIM Note: maturase Location: 10358-10556 bp Feature: domain Description: GIIM Note: maturase Location: 103 58-10556 bp Feature: gene Location: 11393-11818 bp Feature: domain Description: PHA02517 Location: 11417-11753 bp Feature: domain Description: PHA02517 Location: 11417-11753 bp Feature: gene Location: 11949-13100 bp Feature: domain Description: HTH_38 Location: 11958-12072 bp Feature: domain Description: HTH_3 8 Location: 11958-12072 bp Feature: domain Description: Tra8 Location: 12108-13089 bp Feature: domain Description: Tra8 Location: 12108-13 089 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2085 (Predicted dinucleotide-binding enzyme ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), HTH_38 (pfam13936), Tra8 (COG2826)