myRT

myRT report for GCA_003145335.1_ASM314533v1

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Seq: NBDA01000020.1 Escherichia coli strain Sum2013_WWKa_OUT_49 Cont020, whole genome shotgun sequence (13112 bp)
Overview 1 RT 1: 8373-13092 bp Neighborhood of RT #1 [8373, 13103] COG2085 PHA02517 RVT-GII GIIM PHA02517 HTH_38 Tra8 Feature: gene Location: 8373-8786 bp Feature: domain Description: COG2085 Location: 8472-8619 bp Feature: domain Description: COG2085 Location: 8472-861 9 bp Feature: gene Location: 8952-9116 bp Feature: domain Description: PHA02517 Location: 8955-9045 bp Feature: domain Description: PHA0251 7 Location: 8955-9045 bp Feature: gene Location: 9281-10804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9554-10286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9554-1 0286 bp Feature: domain Description: GIIM Note: maturase Location: 10361-10559 bp Feature: domain Description: GIIM Note: maturase Location: 1 0361 -1 0559 bp Feature: gene Location: 11396-11821 bp Feature: domain Description: PHA02517 Location: 11420-11756 bp Feature: domain Description: PHA0251 7 Location: 1 1 420-1 1 756 bp Feature: gene Location: 11952-13103 bp Feature: domain Description: HTH_38 Location: 11961-12075 bp Feature: domain Description: HTH_38 Location: 1 1 961 -1 2075 bp Feature: domain Description: Tra8 Location: 12111-13092 bp Feature: domain Description: Tra8 Location: 1 21 1 1 -1 3092 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2085 (Predicted dinucleotide-binding enzyme ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), HTH_38 (pfam13936), Tra8 (COG2826)

Seq: NBDA01000087.1 Escherichia coli strain Sum2013_WWKa_OUT_49 Cont087, whole genome shotgun sequence (55217 bp)
Overview 1 RT 1: 10211-14228 bp Neighborhood of RT #1 [10211, 14275] PLN02240 YhhI RVT-GII RVT-GII DDE_Tnp_1_assoc Feature: gene Location: 10211-11266 bp Feature: domain Description: PLN02240 Location: 10217-11228 bp Feature: domain Description: PLN02 2 40 Location: 102 17-112 2 8 bp Feature: gene Location: 11355-11543 bp Feature: domain Description: YhhI Location: 11364-11526 bp Feature: domain Description: YhhI Location: 11364-1152 6 bp Feature: gene Location: 12510-12695 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12519-12672 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 519-12 672 bp Feature: gene Location: 13096-13317 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13261-13306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132 61-13306 bp Feature: gene Location: 13440-13682 bp Feature: gene Location: 14048-14275 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 14063-14228 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 14063-142 2 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PLN02240 (UDP-glucose 4-epimerase), YhhI (COG5433), RVT-GII, DDE_Tnp_1_assoc (pfam13808)

Seq: NBDA01000091.1 Escherichia coli strain Sum2013_WWKa_OUT_49 Cont091, whole genome shotgun sequence (198143 bp)
Overview 1 RT 1: 110398-116243 bp Neighborhood of RT #1 [110398, 116245] Pox_D5 RVT-Retrons TIR_2 Prim_Zn_Ribbon COG3378 DUF5375 Feature: gene Location: 110398-110574 bp Feature: gene Location: 110969-111121 bp Feature: domain Description: Pox_D5 Location: 110972-111095 bp Feature: domain Description: Pox_D5 Location: 110972-111095 bp Feature: gene Location: 111359-112990 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 111674-112271 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 111674-112271 bp Feature: domain Description: TIR_2 Location: 112595-112952 bp Feature: domain Description: TIR_2 Location: 112595-112952 bp Feature: gene Location: 113577-115910 bp Feature: domain Description: Prim_Zn_Ribbon Location: 113667-113775 bp Feature: domain Description: Prim_Zn_Ribbon Location: 113 667-113 775 bp Feature: domain Description: COG3378 Location: 114384-115899 bp Feature: domain Description: COG3 3 78 Location: 1143 84-115899 bp Feature: gene Location: 115925-116245 bp Feature: domain Description: DUF5375 Location: 115928-116243 bp Feature: domain Description: DUF53 75 Location: 115928-116243 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Pox_D5 (pfam03288), RVT-Retrons, TIR_2 (pfam13676), Prim_Zn_Ribbon (smart00778), COG3378 (Phage- or plasmid-associated DNA primase ), DUF5375 (pfam17345)