myRT

myRT report for GCA_003145655.1_ASM314565v1

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Seq: NBDK01000003.1 Escherichia coli strain Spr2013_WWKa_OUT_27 Cont003, whole genome shotgun sequence (5195 bp)
Overview 1 RT 1: 1433-4627 bp Neighborhood of RT #1 [1433, 5019] umuC PRK10276 RVT-GII Feature: gene Location: 1433-2704 bp Feature: domain Description: umuC Location: 1436-2699 bp Feature: domain Description: umuC Location: 1 436-2699 bp Feature: gene Location: 2704-3378 bp Feature: domain Description: PRK10276 Location: 2956-3364 bp Feature: domain Description: PRK1 0276 Location: 2956-3364 bp Feature: gene Location: 3532-5019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3937-4627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3937-4627 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII

Seq: NBDK01000116.1 Escherichia coli strain Spr2013_WWKa_OUT_27 Cont116, whole genome shotgun sequence (24262 bp)
Overview 1 RT 1: 11971-15855 bp Neighborhood of RT #1 [11971, 15855] RVT-Retrons DUF932 Feature: gene Location: 11971-12105 bp Feature: gene Location: 12227-12397 bp Feature: gene Location: 12556-14280 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12694-13318 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12 694-13318 bp Feature: gene Location: 14531-15352 bp Feature: domain Description: DUF932 Location: 14645-15317 bp Feature: domain Description: DUF932 Location: 14645-15317 bp Feature: gene Location: 15427-15855 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF932 (pfam06067)

Seq: NBDK01000135.1 Escherichia coli strain Spr2013_WWKa_OUT_27 Cont135, whole genome shotgun sequence (18201 bp)
Overview 1 RT 1: 15244-17865 bp Neighborhood of RT #1 [15244, 18110] InsE PHA02517 RVT-GII GIIM Feature: gene Location: 15244-15528 bp Feature: domain Description: InsE Location: 15256-15517 bp Feature: domain Description: InsE Location: 15256-15517 bp Feature: gene Location: 15570-15995 bp Feature: domain Description: PHA02517 Location: 15591-15930 bp Feature: domain Description: PHA02517 Location: 15591-1593 0 bp Feature: gene Location: 16587-18110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16860-17592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16860-17592 bp Feature: domain Description: GIIM Note: maturase Location: 17667-17865 bp Feature: domain Description: GIIM Note: maturase Location: 17667-17865 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: NBDK01000156.1 Escherichia coli strain Spr2013_WWKa_OUT_27 Cont156, whole genome shotgun sequence (9188 bp)
Overview 1 RT 1: 92-2567 bp Neighborhood of RT #1 [92, 2632] RVT-GII GIIM PHA02517 Feature: gene Location: 92-1615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 365-1097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 365-1097 bp Feature: domain Description: GIIM Note: maturase Location: 1172-1370 bp Feature: domain Description: GIIM Note: maturase Location: 1172-1370 bp Feature: gene Location: 1569-1994 bp Feature: gene Location: 2207-2632 bp Feature: domain Description: PHA02517 Location: 2228-2567 bp Feature: domain Description: PHA02517 Location: 2228-2567 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: NBDK01000157.1 Escherichia coli strain Spr2013_WWKa_OUT_27 Cont157, whole genome shotgun sequence (50471 bp)
Overview 1 RT 1: 3-4078 bp Neighborhood of RT #1 [3, 4083] PHA02517 RVT-GII GIIM PHA02517 fruct_sucro_rep Feature: gene Location: 3-530 bp Feature: domain Description: PHA02517 Location: 126-465 bp Feature: domain Description: PHA025 17 Location: 126-465 bp Feature: gene Location: 1122-2645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1395-2127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1395 -2127 bp Feature: domain Description: GIIM Note: maturase Location: 2202-2400 bp Feature: domain Description: GIIM Note: maturase Location: 2202-2400 bp Feature: gene Location: 2803-2967 bp Feature: domain Description: PHA02517 Location: 2842-2935 bp Feature: domain Description: PHA025 17 Location: 2842-2935 bp Feature: gene Location: 3079-4083 bp Feature: domain Description: fruct_sucro_rep Location: 3100-4078 bp Feature: domain Description: fruct_sucro_rep Location: 3100-4078 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), fruct_sucro_rep (TIGR02417)

Seq: NBDK01000158.1 Escherichia coli strain Spr2013_WWKa_OUT_27 Cont158, whole genome shotgun sequence (28944 bp)
Overview 1 RT 1: 3-5112 bp Neighborhood of RT #1 [3, 5129] PHA02517 RVT-GII GIIM PHA02517 LysM IAT_beta PRK15318 Invasin_D3 Feature: gene Location: 3-530 bp Feature: domain Description: PHA02517 Location: 126-465 bp Feature: domain Description: PHA02517 Location: 126 -46 5 bp Feature: gene Location: 1122-2645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1395-2127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1395-2127 bp Feature: domain Description: GIIM Note: maturase Location: 2202-2400 bp Feature: domain Description: GIIM Note: maturase Location: 2202-2400 bp Feature: gene Location: 2768-3202 bp Feature: domain Description: PHA02517 Location: 2771-3194 bp Feature: domain Description: PHA02517 Location: 2771-3194 bp Feature: gene Location: 3204-5129 bp Feature: domain Description: LysM Location: 3492-3630 bp Feature: domain Description: LysM Location: 3492-36 30 bp Feature: domain Description: IAT_beta Location: 3711-4536 bp Feature: domain Description: IAT_beta Location: 3711-4536 bp Feature: domain Description: PRK15318 Location: 4737-4860 bp Feature: domain Description: PRK15318 Location: 4737-486 0 bp Feature: domain Description: Invasin_D3 Location: 4875-5112 bp Feature: domain Description: Invasin_D3 Location: 4875-5112 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), LysM (smart00257), IAT_beta (pfam11924), PRK15318 (intimin-like protein SinH; Provisional), Invasin_D3 (pfam09134)