myRT

myRT report for GCA_003145915.1_ASM314591v1

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Seq: NBJZ01000028.1 Escherichia coli strain Spr2013_WWKa_ALT_55 Cont028, whole genome shotgun sequence (3820 bp)
Overview 1 RT 1: 22-3819 bp Neighborhood of RT #1 [22, 3819] COG3547 RVT-GII GIIM Feature: gene Location: 22-1098 bp Feature: domain Description: COG3547 Location: 61-982 bp Feature: domain Description: COG3547 Location: 61 -982 bp Feature: gene Location: 1347-1550 bp Feature: gene Location: 1640-3163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1913-2645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 91 3-2645 bp Feature: domain Description: GIIM Note: maturase Location: 2720-2918 bp Feature: domain Description: GIIM Note: maturase Location: 2720-291 8 bp Feature: gene Location: 3457-3819 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: NBJZ01000044.1 Escherichia coli strain Spr2013_WWKa_ALT_55 Cont044, whole genome shotgun sequence (3864 bp)
Overview 1 RT 1: 92-3864 bp Neighborhood of RT #1 [92, 3863] RVT-GII GIIM HTH_38 Tra8 Feature: gene Location: 92-1615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 365-1097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 365-1097 bp Feature: domain Description: GIIM Note: maturase Location: 1172-1370 bp Feature: domain Description: GIIM Note: maturase Location: 1172 -1370 bp Feature: gene Location: 1909-2400 bp Feature: gene Location: 2763-3863 bp Feature: domain Description: HTH_38 Location: 2772-2886 bp Feature: domain Description: HTH_38 Location: 2 772 -2 886 bp Feature: domain Description: Tra8 Location: 2922-3864 bp Feature: domain Description: Tra8 Location: 2 92 2 -3864 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_38 (pfam13936), Tra8 (COG2826), RVT-GII, GIIM (pfam08388)

Seq: NBJZ01000146.1 Escherichia coli strain Spr2013_WWKa_ALT_55 Cont146, whole genome shotgun sequence (19375 bp)
Overview 1 RT 1: 14004-19201 bp Neighborhood of RT #1 [14004, 19201] TIGR02646 COG3950 RVT-Retrons Feature: gene Location: 14004-14735 bp Feature: domain Description: TIGR02646 Location: 14103-14613 bp Feature: domain Description: TIGR02646 Location: 14103 -14613 bp Feature: gene Location: 14735-16360 bp Feature: domain Description: COG3950 Location: 14909-16262 bp Feature: domain Description: COG3 950 Location: 14909-16262 bp Feature: gene Location: 16365-17297 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16464-17061 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16464-17061 bp Feature: gene Location: 17729-19201 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons