myRT

myRT report for GCA_003146415.1_ASM314641v1

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Seq: NBKQ01000045.1 Escherichia coli strain Aut2013_WWKa_OUT_3 Cont045, whole genome shotgun sequence (3923 bp)
Overview 1 RT 1: 1-3873 bp Neighborhood of RT #1 [1, 3920] RhsA RVT-GII group_II_RT_mat DDE_Tnp_1_assoc Feature: gene Location: 1-1047 bp Feature: domain Description: RhsA Location: 4-613 bp Feature: domain Description: RhsA Location: 4-61 3 bp Feature: gene Location: 1048-1446 bp Feature: gene Location: 1890-2969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2361-2952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2361 -2952 bp Feature: gene Location: 2991-3242 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2997-3225 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2997-3225 bp Feature: gene Location: 3591-3920 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 3612-3873 bp Feature: domain Description: DDE_Tnp_1 _assoc Location: 361 2-3873 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RhsA (COG3209), RVT-GII, group_II_RT_mat (TIGR04416), DDE_Tnp_1_assoc (pfam13808)

Seq: NBKQ01000076.1 Escherichia coli strain Aut2013_WWKa_OUT_3 Cont076, whole genome shotgun sequence (54768 bp)
Overview 1 RT 1: 7996-10718 bp Neighborhood of RT #1 [7996, 10804] PyrBI_leader RVT-GII GIIM RVT-GII CdiI_3 Feature: gene Location: 7996-8208 bp Feature: domain Description: PyrBI_leader Location: 8080-8206 bp Feature: domain Description: PyrBI_leader Location: 8080-82 06 bp Feature: gene Location: 8211-8429 bp Feature: gene Location: 8679-9449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8682-9096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8682 -9096 bp Feature: domain Description: GIIM Note: maturase Location: 9147-9312 bp Feature: domain Description: GIIM Note: maturase Location: 9147-9312 bp Feature: gene Location: 9488-9970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9809-9896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9809-9896 bp Feature: gene Location: 9953-10417 bp Feature: gene Location: 10418-10804 bp Feature: domain Description: CdiI_3 Location: 10442-10718 bp Feature: domain Description: CdiI_3 Location: 10442 -10718 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PyrBI_leader (pfam08052), RVT-GII, GIIM (pfam08388), CdiI_3 (pfam18616)