myRT

myRT report for GCA_003146495.1_ASM314649v1

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Seq: NBKZ01000030.1 Escherichia coli strain Aut2013_WWKa_ALT_48 Cont030, whole genome shotgun sequence (125307 bp)
Overview 1 RT 1: 84953-88835 bp Neighborhood of RT #1 [84953, 88840] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 84953-85669 bp Feature: domain Description: rph Location: 84956-85664 bp Feature: domain Description: rph Location: 84956-85664 bp Feature: gene Location: 85720-86376 bp Feature: domain Description: pyrE Location: 85738-86371 bp Feature: domain Description: pyrE Location: 85738-86371 bp Feature: gene Location: 86674-87633 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 86809-87358 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 86809-87358 bp Feature: gene Location: 87679-88275 bp Feature: domain Description: slmA Location: 87685-88261 bp Feature: domain Description: slmA Location: 87685-88261 bp Feature: gene Location: 88382-88840 bp Feature: domain Description: dut Location: 88388-88835 bp Feature: domain Description: dut Location: 88388-88835 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: NBKZ01000078.1 Escherichia coli strain Aut2013_WWKa_ALT_48 Cont078, whole genome shotgun sequence (292699 bp)
Overview 1 RT 1: 265411-271788 bp Neighborhood of RT #1 [265411, 271808] XdhC PBP2_CrgA_like_5 RVT-UG8 PRK09678 Psu Feature: gene Location: 265411-266367 bp Feature: domain Description: XdhC Location: 265489-266344 bp Feature: domain Description: XdhC Location: 2 65489-2 66344 bp Feature: gene Location: 266346-266756 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 266418-266730 bp Feature: domain Description: PBP2 _CrgA_like_5 Location: 2 66418-2 66730 bp Feature: gene Location: 267298-269316 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 267871-268324 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 2 67871-2 6832 4 bp Feature: gene Location: 270979-271251 bp Feature: domain Description: PRK09678 Location: 270988-271153 bp Feature: domain Description: PRK09678 Location: 2 70988-2 71153 bp Feature: gene Location: 271257-271808 bp Feature: domain Description: Psu Location: 271278-271788 bp Feature: domain Description: Psu Location: 2 712 78-2 71788 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XdhC (COG1975), PBP2_CrgA_like_5 (cd08474), RVT-UG8, PRK09678 (DNA-binding transcriptional regulator; Provisional), Psu (pfam07455)

Seq: NBKZ01000149.1 Escherichia coli strain Aut2013_WWKa_ALT_48 Cont149, whole genome shotgun sequence (3440 bp)
Overview 1 RT 1: 2-2246 bp Neighborhood of RT #1 [2, 2266] IS285 RVT-GII PRK15434 Feature: gene Location: 2-742 bp Feature: domain Description: IS285 Location: 32-722 bp Feature: domain Description: IS285 Location: 3 2-722 bp Feature: gene Location: 791-1084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 962-1067 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 962-1067 bp Feature: gene Location: 1579-1764 bp Feature: gene Location: 1793-2266 bp Feature: domain Description: PRK15434 Location: 1796-2246 bp Feature: domain Description: PRK1543 4 Location: 1796-2246 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), RVT-GII, PRK15434 (GDP-mannose mannosyl hydrolase)