myRT

myRT report for GCA_003150445.1_ASM315044v1

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Seq: QAMA01000028.1 Lachnospiraceae bacterium isolate CIM:MAG 54 contig_1483, whole genome shotgun sequence (184759 bp)
Overview 1 RT 1: 180346-184748 bp Neighborhood of RT #1 [180346, 184756] bZIP_YAP bZIP_YAP RVT-DGRs COG3415 DDE_3 RVT-GII Feature: gene Location: 180346-180519 bp Feature: gene Location: 180533-180802 bp Feature: domain Description: bZIP_YAP Location: 180545-180590 bp Feature: domain Description: bZIP_YAP Location: 1 80545-1 80590 bp Feature: domain Description: bZIP_YAP Location: 180695-180779 bp Feature: domain Description: bZIP_YAP Location: 1 80695-1 80779 bp Feature: gene Location: 180753-182021 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 180996-181719 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 80996-1 81 71 9 bp Feature: gene Location: 182242-182790 bp Feature: gene Location: 182920-184110 bp Feature: domain Description: COG3415 Location: 183010-183400 bp Feature: domain Description: COG341 5 Location: 1 8301 0-1 83400 bp Feature: domain Description: DDE_3 Location: 183622-183976 bp Feature: domain Description: DDE_3 Location: 1 83622-1 83976 bp Feature: gene Location: 184184-184756 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 184202-184748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 84202-1 84748 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT bZIP_YAP (cd14688), RVT-DGRs, COG3415 (Transposase ), DDE_3 (pfam13358), RVT-GII

Seq: QAMA01000003.1 Lachnospiraceae bacterium isolate CIM:MAG 54 contig_170528, whole genome shotgun sequence (45972 bp)
Overview 1 RT 1: 18294-22056 bp 2 RT 2: 43571-45920 bp Neighborhood of RT #1 [18294, 22073] RVT-GII GIIM HTH_ARAC Neighborhood of RT #2 [43571, 45970] sigma70-ECF RVT-GII Feature: gene Location: 18294-18623 bp Feature: gene Location: 18860-19171 bp Feature: gene Location: 19224-20615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19539-20166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19539-2 0166 bp Feature: domain Description: GIIM Note: maturase Location: 20220-20442 bp Feature: domain Description: GIIM Note: maturase Location: 2 02 2 0-2 0442 bp Feature: gene Location: 20686-20991 bp Feature: gene Location: 21069-22073 bp Feature: domain Description: HTH_ARAC Location: 21807-22056 bp Feature: domain Description: HTH_ARAC Location: 2 1807-2 2 056 bp Feature: gene Location: 43571-44131 bp Feature: domain Description: sigma70-ECF Location: 43622-44108 bp Feature: domain Description: sigma70-ECF Location: 4362 2 -44108 bp Feature: gene Location: 44128-44913 bp Feature: gene Location: 45059-45970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45719-45920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45719-4592 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_ARAC (smart00342), sigma70-ECF (TIGR02937)