myRT

myRT report for GCA_003151155.1_20120700_P3D

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Seq: PLWX01000091.1 Acidobacteriaceae bacterium isolate palsa_359 73.20120700_P3D.64_contig_38239, whole genome shotgun sequence (26269 bp)
Overview 1 RT 1: 2-5480 bp Neighborhood of RT #1 [2, 5488] EbsC RVT-CRISPR-like DAP2 TrmJ Feature: gene Location: 2-487 bp Feature: domain Description: EbsC Location: 14-443 bp Feature: domain Description: EbsC Location: 1 4-443 bp Feature: gene Location: 682-1188 bp Feature: gene Location: 1347-2699 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1596-2163 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1 596-21 63 bp Feature: gene Location: 2707-4617 bp Feature: domain Description: DAP2 Location: 2770-4606 bp Feature: domain Description: DAP2 Location: 2770-4606 bp Feature: gene Location: 4757-5488 bp Feature: domain Description: TrmJ Location: 4778-5480 bp Feature: domain Description: TrmJ Location: 4778-5480 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, EbsC (COG2606), TrmJ (COG0565)

Seq: PLWX01000254.1 Acidobacteriaceae bacterium isolate palsa_359 73.20120700_P3D.64_contig_79713, whole genome shotgun sequence (19619 bp)
Overview 1 RT 1: 14067-17323 bp Neighborhood of RT #1 [14067, 17323] DUF4440 RVT-GII GIIM INT_ICEBs1_C_like Feature: gene Location: 14067-14564 bp Feature: domain Description: DUF4440 Location: 14190-14535 bp Feature: domain Description: DUF4440 Location: 14190-14535 bp Feature: gene Location: 14675-14809 bp Feature: gene Location: 14883-15608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14919-15225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14919-152 2 5 bp Feature: domain Description: GIIM Note: maturase Location: 15303-15537 bp Feature: domain Description: GIIM Note: maturase Location: 15303-15537 bp Feature: gene Location: 16156-16728 bp Feature: domain Description: INT_ICEBs1_C_like Location: 16183-16639 bp Feature: domain Description: INT_ICEBs1_C_like Location: 16183-16639 bp Feature: gene Location: 16583-17323 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4440 (pfam14534), RVT-GII, GIIM (pfam08388), INT_ICEBs1_C_like (cd01189)