myRT

myRT report for GCA_003151425.1_20120700_P3D

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Seq: PLXO01000284.1 Acetobacteraceae bacterium isolate palsa_925 73.20120700_P3D.41_contig_112769, whole genome shotgun sequence (10214 bp)
Overview 1 RT 1: 2019-8593 bp Neighborhood of RT #1 [2019, 8593] PRK10743 YjlB RVT-GII GIIM Feature: gene Location: 2019-2501 bp Feature: domain Description: PRK10743 Location: 2022-2430 bp Feature: domain Description: PRK1 0743 Location: 2022-2430 bp Feature: gene Location: 2740-3237 bp Feature: domain Description: YjlB Location: 2755-3229 bp Feature: domain Description: YjlB Location: 2755-3229 bp Feature: gene Location: 3310-4767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3664-4288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3664-4288 bp Feature: domain Description: GIIM Note: maturase Location: 4330-4453 bp Feature: domain Description: GIIM Note: maturase Location: 4330-4453 bp Feature: gene Location: 5745-6926 bp Feature: gene Location: 6923-8593 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10743 (heat shock chaperone IbpA), YjlB (COG4297), RVT-GII, GIIM (pfam08388)

Seq: PLXO01000314.1 Acetobacteraceae bacterium isolate palsa_925 73.20120700_P3D.41_contig_38743, whole genome shotgun sequence (23364 bp)
Overview 1 RT 1: 43-4295 bp Neighborhood of RT #1 [43, 4315] RVT-GII DUF2336 DUF2336 sensory_box GGDEF Feature: gene Location: 43-618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49-187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49-187 bp Feature: gene Location: 693-2006 bp Feature: domain Description: DUF2336 Location: 804-951 bp Feature: domain Description: DUF2 336 Location: 804-951 bp Feature: domain Description: DUF2336 Location: 1131-1911 bp Feature: domain Description: DUF2 336 Location: 1131-1911 bp Feature: gene Location: 2003-4315 bp Feature: domain Description: sensory_box Location: 2939-3287 bp Feature: domain Description: sensory_box Location: 2 939-32 87 bp Feature: domain Description: GGDEF Location: 3776-4295 bp Feature: domain Description: GGDEF Location: 3776-42 95 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sensory_box (TIGR00229), GGDEF (TIGR00254), RVT-GII, DUF2336 (pfam10098)

Seq: PLXO01000076.1 Acetobacteraceae bacterium isolate palsa_925 73.20120700_P3D.41_contig_4613, whole genome shotgun sequence (100806 bp)
Overview 1 RT 1: 23110-30943 bp Neighborhood of RT #1 [23110, 30969] RHH_8 Esterase_phd RVT-GII Kup ABC2_membrane_3 Feature: gene Location: 23110-23532 bp Feature: domain Description: RHH_8 Location: 23155-23506 bp Feature: domain Description: RHH_8 Location: 23 155-23 506 bp Feature: gene Location: 23659-24975 bp Feature: domain Description: Esterase_phd Location: 24124-24712 bp Feature: domain Description: Esterase_phd Location: 24124-24712 bp Feature: gene Location: 25828-27357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26236-26926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2623 6-26926 bp Feature: gene Location: 27535-29427 bp Feature: domain Description: Kup Location: 27583-29425 bp Feature: domain Description: Kup Location: 27583 -29425 bp Feature: gene Location: 29845-30969 bp Feature: domain Description: ABC2_membrane_3 Location: 29929-30943 bp Feature: domain Description: ABC2_membrane_3 Location: 29929-3 0943 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RHH_8 (pfam17723), Esterase_phd (pfam10503), RVT-GII, Kup (COG3158), ABC2_membrane_3 (pfam12698)