myRT

myRT report for GCA_003151435.1_20120700_P3D

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Seq: PLXP01000057.1 Acidobacteriaceae bacterium isolate palsa_355 73.20120700_P3D.39_contig_7054, whole genome shotgun sequence (45966 bp)
Overview 1 RT 1: 41324-45966 bp Neighborhood of RT #1 [41324, 45965] TPR TPR TPR TPR TPR_2 VCBS FG-GAP VCBS VCBS FG-GAP UnbV_ASPIC RVT-GII Feature: gene Location: 41324-43042 bp Feature: domain Description: TPR Location: 41552-41837 bp Feature: domain Description: TPR Location: 41 552-41 837 bp Feature: domain Description: TPR Location: 41972-42161 bp Feature: domain Description: TPR Location: 41 972-421 61 bp Feature: domain Description: TPR Location: 42206-42443 bp Feature: domain Description: TPR Location: 42206-42443 bp Feature: domain Description: TPR Location: 42611-42869 bp Feature: domain Description: TPR Location: 4261 1 -42869 bp Feature: domain Description: TPR_2 Location: 42896-42989 bp Feature: domain Description: TPR_2 Location: 42896-42989 bp Feature: gene Location: 43140-44942 bp Feature: domain Description: VCBS Location: 43407-43617 bp Feature: domain Description: VCBS Location: 43407-4361 7 bp Feature: domain Description: FG-GAP Location: 43716-43779 bp Feature: domain Description: FG-GAP Location: 4371 6-43779 bp Feature: domain Description: VCBS Location: 43899-44031 bp Feature: domain Description: VCBS Location: 43899-44031 bp Feature: domain Description: VCBS Location: 44220-44358 bp Feature: domain Description: VCBS Location: 44220-44358 bp Feature: domain Description: FG-GAP Location: 44523-44565 bp Feature: domain Description: FG-GAP Location: 44523-44565 bp Feature: domain Description: UnbV_ASPIC Location: 44667-44865 bp Feature: domain Description: UnbV_ASPIC Location: 44667-44865 bp Feature: gene Location: 45678-45965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45882-45966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45882-45966 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR (smart00028), TPR_2 (pfam07719), VCBS (pfam13517), FG-GAP (pfam01839), UnbV_ASPIC (pfam07593), RVT-GII

Seq: PLXP01000202.1 Acidobacteriaceae bacterium isolate palsa_355 73.20120700_P3D.39_contig_71883, whole genome shotgun sequence (20938 bp)
Overview 1 RT 1: 18137-20732 bp Neighborhood of RT #1 [18137, 20809] LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT-GII GIIM Feature: gene Location: 18137-19048 bp Feature: domain Description: LZ_Tnp_IS66 Location: 18314-18539 bp Feature: domain Description: LZ_Tnp_IS66 Location: 18314-18539 bp Feature: domain Description: zf-IS66 Location: 18569-18698 bp Feature: domain Description: zf-IS66 Location: 18569-18698 bp Feature: domain Description: DDE_Tnp_IS66 Location: 18749-19022 bp Feature: domain Description: DDE_Tnp_IS66 Location: 18749-1902 2 bp Feature: gene Location: 19193-19879 bp Feature: gene Location: 19565-20809 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19769-20423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19769-2 042 3 bp Feature: domain Description: GIIM Note: maturase Location: 20507-20732 bp Feature: domain Description: GIIM Note: maturase Location: 2 0507-2 0732 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388)

Seq: PLXP01000161.1 Acidobacteriaceae bacterium isolate palsa_355 73.20120700_P3D.39_contig_94073, whole genome shotgun sequence (23613 bp)
Overview 1 RT 1: 16865-20756 bp Neighborhood of RT #1 [16865, 20756] RVT-GII GIIM Feature: gene Location: 16865-17233 bp Feature: gene Location: 17405-17725 bp Feature: gene Location: 17949-19193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18153-18810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18153 -18810 bp Feature: domain Description: GIIM Note: maturase Location: 18891-19110 bp Feature: domain Description: GIIM Note: maturase Location: 18891-19110 bp Feature: gene Location: 19560-19757 bp Feature: gene Location: 19773-20756 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PLXP01000027.1 Acidobacteriaceae bacterium isolate palsa_355 73.20120700_P3D.39_contig_97839, whole genome shotgun sequence (4656 bp)
Overview 1 RT 1: 2116-4544 bp Neighborhood of RT #1 [2116, 4642] OmpR RVT-GII GIIM Feature: gene Location: 2116-2841 bp Feature: domain Description: OmpR Location: 2152-2824 bp Feature: domain Description: OmpR Location: 2152-2824 bp Feature: gene Location: 3299-3550 bp Feature: gene Location: 3815-4642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3824-4256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3824 -4 256 bp Feature: domain Description: GIIM Note: maturase Location: 4343-4544 bp Feature: domain Description: GIIM Note: maturase Location: 4 34 3-4 54 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OmpR (COG0745), RVT-GII, GIIM (pfam08388)