myRT

myRT report for GCA_003151665.1_20120700_P3D

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Seq: PLYD01000185.1 Candidate division AD3 bacterium isolate palsa_872 73.20120700_P3D.30_contig_22568, whole genome shotgun sequence (47129 bp)
Overview 1 RT 1: 20564-26104 bp Neighborhood of RT #1 [20564, 26104] Vgb Vgb Vgb RVT-UG23 HTH_31 Feature: gene Location: 20564-21862 bp Feature: domain Description: Vgb Location: 20786-21101 bp Feature: domain Description: Vgb Location: 20786-21 1 01 bp Feature: domain Description: Vgb Location: 21185-21527 bp Feature: domain Description: Vgb Location: 21 1 85-21 527 bp Feature: domain Description: Vgb Location: 21632-21812 bp Feature: domain Description: Vgb Location: 21 632-21 81 2 bp Feature: gene Location: 22162-23100 bp Feature: gene Location: 23409-24893 bp Feature: RT Description: RVT-UG23 Note: UG23 RT Location: 23625-24225 bp Feature: RT Description: RVT-UG23 Note: UG23 RT Location: 23625-24225 bp Feature: gene Location: 24948-25130 bp Feature: domain Description: HTH_31 Location: 24954-25089 bp Feature: domain Description: HTH_31 Location: 24954-25089 bp Feature: gene Location: 25190-26104 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Vgb (COG4257), RVT-UG23, HTH_31 (pfam13560)

Seq: PLYD01000033.1 Candidate division AD3 bacterium isolate palsa_872 73.20120700_P3D.30_contig_31124, whole genome shotgun sequence (10494 bp)
Overview 1 RT 1: 6724-9956 bp Neighborhood of RT #1 [6724, 10048] YpbQ BH0617 RVT-GII GIIM Feature: gene Location: 6724-7239 bp Feature: domain Description: YpbQ Location: 6727-7207 bp Feature: domain Description: YpbQ Location: 672 7-72 07 bp Feature: gene Location: 7236-8297 bp Feature: domain Description: BH0617 Location: 7254-8286 bp Feature: domain Description: BH0617 Location: 72 54-82 86 bp Feature: gene Location: 8759-10048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9008-9671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9008-9671 bp Feature: domain Description: GIIM Note: maturase Location: 9740-9956 bp Feature: domain Description: GIIM Note: maturase Location: 9740-9956 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YpbQ (COG1755), BH0617 (COG3424), RVT-GII, GIIM (pfam08388)

Seq: PLYD01000245.1 Candidate division AD3 bacterium isolate palsa_872 73.20120700_P3D.30_contig_33930, whole genome shotgun sequence (14078 bp)
Overview 1 RT 1: 11188-13926 bp Neighborhood of RT #1 [11188, 14018] OpuBA RVT-GII GIIM Feature: gene Location: 11188-12297 bp Feature: domain Description: OpuBA Location: 11317-12244 bp Feature: domain Description: OpuBA Location: 113 17-12244 bp Feature: gene Location: 12408-12710 bp Feature: gene Location: 12678-14018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12996-13623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12996-13 623 bp Feature: domain Description: GIIM Note: maturase Location: 13710-13926 bp Feature: domain Description: GIIM Note: maturase Location: 13 710-13 926 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OpuBA (COG1125), RVT-GII, GIIM (pfam08388)

Seq: PLYD01000280.1 Candidate division AD3 bacterium isolate palsa_872 73.20120700_P3D.30_contig_3667, whole genome shotgun sequence (79574 bp)
Overview 1 RT 1: 72558-76009 bp Neighborhood of RT #1 [72558, 76071] HEAT HEAT HTH_ARSR NT_KNTase_like RVT-GII GIIM IstB_IS21 Feature: gene Location: 72558-72842 bp Feature: domain Description: HEAT Location: 72627-72699 bp Feature: domain Description: HEAT Location: 72627-72699 bp Feature: domain Description: HEAT Location: 72720-72789 bp Feature: domain Description: HEAT Location: 72720-72789 bp Feature: gene Location: 72943-73509 bp Feature: domain Description: HTH_ARSR Location: 72973-73174 bp Feature: domain Description: HTH_ARSR Location: 72973-73174 bp Feature: domain Description: NT_KNTase_like Location: 73216-73447 bp Feature: domain Description: NT_KNTase_like Location: 73216-734 4 7 bp Feature: gene Location: 73723-75123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73918-74611 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73918-74 611 bp Feature: domain Description: GIIM Note: maturase Location: 74680-74908 bp Feature: domain Description: GIIM Note: maturase Location: 74 680-74 908 bp Feature: gene Location: 75236-75406 bp Feature: gene Location: 75775-76071 bp Feature: domain Description: IstB_IS21 Location: 75784-76009 bp Feature: domain Description: IstB_IS21 Location: 75784 -76009 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HEAT (sd00044), HTH_ARSR (smart00418), NT_KNTase_like (cd05403), RVT-GII, GIIM (pfam08388), IstB_IS21 (pfam01695)

Seq: PLYD01000283.1 Candidate division AD3 bacterium isolate palsa_872 73.20120700_P3D.30_contig_84546, whole genome shotgun sequence (3425 bp)
Overview 1 RT 1: 1-3004 bp Neighborhood of RT #1 [1, 3111] RVT-GII TPR TPR_2 TPR TPR_2 TPR GT9_LPS_heptosyltransferase Feature: gene Location: 1-501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-490 bp Feature: gene Location: 818-1057 bp Feature: gene Location: 1105-3111 bp Feature: domain Description: TPR Location: 1129-1402 bp Feature: domain Description: TPR Location: 1129-1402 bp Feature: domain Description: TPR_2 Location: 1429-1519 bp Feature: domain Description: TPR_2 Location: 1429-15 19 bp Feature: domain Description: TPR Location: 1525-1810 bp Feature: domain Description: TPR Location: 15 25 -1810 bp Feature: domain Description: TPR_2 Location: 1834-1927 bp Feature: domain Description: TPR_2 Location: 1834-1927 bp Feature: domain Description: TPR Location: 1933-2191 bp Feature: domain Description: TPR Location: 1933-2191 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 2815-3004 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 2815 -3004 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, TPR (smart00028), TPR_2 (pfam07719), GT9_LPS_heptosyltransferase (cd03789)

Seq: PLYD01000216.1 Candidate division AD3 bacterium isolate palsa_872 73.20120700_P3D.30_contig_98681, whole genome shotgun sequence (8670 bp)
Overview 1 RT 1: 6427-8669 bp Neighborhood of RT #1 [6427, 8668] PRK13684 PRK13684 PRK13684 PaaI_thioesterase RVT-GII Feature: gene Location: 6427-7716 bp Feature: domain Description: PRK13684 Location: 6697-6961 bp Feature: domain Description: PRK136 84 Location: 6 6 97-6 96 1 bp Feature: domain Description: PRK13684 Location: 6970-7231 bp Feature: domain Description: PRK136 84 Location: 6 970-7231 bp Feature: domain Description: PRK13684 Location: 7399-7708 bp Feature: domain Description: PRK136 84 Location: 7399-7708 bp Feature: gene Location: 7717-8187 bp Feature: domain Description: PaaI_thioesterase Location: 7834-8170 bp Feature: domain Description: PaaI_thioesterase Location: 7834-8170 bp Feature: gene Location: 8459-8668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8594-8669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8594-86 6 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13684 (photosynthesis system II assembly factor Ycf48), PaaI_thioesterase (cd03443), RVT-GII

Seq: PLYD01000116.1 Candidate division AD3 bacterium isolate palsa_872 73.20120700_P3D.30_contig_98682, whole genome shotgun sequence (10816 bp)
Overview 1 RT 1: 7707-10812 bp Neighborhood of RT #1 [7707, 10814] MrcB RVT-GII Feature: gene Location: 7707-9929 bp Feature: domain Description: MrcB Location: 7770-9507 bp Feature: domain Description: MrcB Location: 7 7 7 0-9507 bp Feature: gene Location: 10152-10490 bp Feature: gene Location: 10422-10814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10740-10812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107 40-10812 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MrcB (COG0744), RVT-GII

Seq: PLYD01000165.1 Candidate division AD3 bacterium isolate palsa_872 73.20120700_P3D.30_contig_98683, whole genome shotgun sequence (4360 bp)
Overview 1 RT 1: 1-4071 bp Neighborhood of RT #1 [1, 4172] RVT-GII GIIM M3B_PepF YcjD Feature: gene Location: 1-126 bp Feature: gene Location: 186-1760 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 738-1365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 738 -1365 bp Feature: domain Description: GIIM Note: maturase Location: 1452-1668 bp Feature: domain Description: GIIM Note: maturase Location: 1452-1668 bp Feature: gene Location: 1904-3610 bp Feature: domain Description: M3B_PepF Location: 2042-3566 bp Feature: domain Description: M3B_PepF Location: 2042-3566 bp Feature: gene Location: 3723-4172 bp Feature: domain Description: YcjD Location: 3732-4071 bp Feature: domain Description: YcjD Location: 3732-4071 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), M3B_PepF (cd09610), YcjD (COG2852)