myRT

myRT report for GCA_003152225.1_20120700_P3D

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Seq: PLZQ01000488.1 Verrucomicrobia subdivision 3 bacterium isolate palsa_1440 73.20120700_P3D.123_contig_2854, whole genome shotgun sequence (49279 bp)
Overview 1 RT 1: 3-2869 bp Neighborhood of RT #1 [3, 2869] RVT-GII RVT-GII GIIM DUF4062 DUF4062 Feature: gene Location: 3-419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 189-417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 89-41 7 bp Feature: gene Location: 310-1296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409-811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409-81 1 bp Feature: domain Description: GIIM Note: maturase Location: 856-1066 bp Feature: domain Description: GIIM Note: maturase Location: 856-1 066 bp Feature: gene Location: 1365-2411 bp Feature: domain Description: DUF4062 Location: 1386-1629 bp Feature: domain Description: DUF4062 Location: 1 386-1 629 bp Feature: domain Description: DUF4062 Location: 1905-2166 bp Feature: domain Description: DUF4062 Location: 1 905-21 66 bp Feature: gene Location: 2645-2869 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF4062 (pfam13271)

Seq: PLZQ01000507.1 Verrucomicrobia subdivision 3 bacterium isolate palsa_1440 73.20120700_P3D.123_contig_3934, whole genome shotgun sequence (55791 bp)
Overview 1 RT 1: 1055-3893 bp Neighborhood of RT #1 [1055, 3893] RVT_N RVT-GII GIIM Feature: gene Location: 1055-1237 bp Feature: gene Location: 1265-1393 bp Feature: gene Location: 1621-3105 bp Feature: domain Description: RVT_N Location: 1672-1915 bp Feature: domain Description: RVT_N Location: 1672 -1915 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1960-2587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1960-2 587 bp Feature: domain Description: GIIM Note: maturase Location: 2641-2872 bp Feature: domain Description: GIIM Note: maturase Location: 2 641-2 872 bp Feature: gene Location: 3270-3608 bp Feature: gene Location: 3630-3893 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: PLZQ01000370.1 Verrucomicrobia subdivision 3 bacterium isolate palsa_1440 73.20120700_P3D.123_contig_6511, whole genome shotgun sequence (15081 bp)
Overview 1 RT 1: 4591-10536 bp Neighborhood of RT #1 [4591, 10565] DUF1016_N DUF1016_N YkfC RVT-UG19 RMtype1_S_HinAWORF1578P-TRD2-CR2_like RMtype1_S_HinAWORF1578P-TRD2-CR2_like Feature: gene Location: 4591-5532 bp Feature: domain Description: DUF1016_N Location: 4666-4939 bp Feature: domain Description: DUF1016_N Location: 4666-493 9 bp Feature: domain Description: DUF1016_N Location: 5176-5332 bp Feature: domain Description: DUF1016_N Location: 5176-53 3 2 bp Feature: gene Location: 5545-5880 bp Feature: gene Location: 5880-7994 bp Feature: domain Description: YkfC Location: 6009-6171 bp Feature: domain Description: YkfC Location: 6009-6171 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 6243-6714 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 6243 -6714 bp Feature: gene Location: 8003-9379 bp Feature: gene Location: 9390-10565 bp Feature: domain Description: RMtype1_S_HinAWORF1578P-TRD2-CR2_like Location: 9657-9909 bp Feature: domain Description: RMtype1_S_HinAWORF1578P-TRD2-CR2_like Location: 9657-9909 bp Feature: domain Description: RMtype1_S_HinAWORF1578P-TRD2-CR2_like Location: 9984-10536 bp Feature: domain Description: RMtype1_S_HinAWORF1578P-TRD2-CR2_like Location: 9984-1053 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1016_N (pfam17761), YkfC (COG3344), RVT-UG19, RMtype1_S_HinAWORF1578P-TRD2-CR2_like (cd17516)