myRT

myRT report for GCA_003152365.1_20120700_P3D

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Seq: PLZY01000027.1 Acidobacteriaceae bacterium isolate palsa_353 73.20120700_P3D.1_contig_1960, whole genome shotgun sequence (21605 bp)
Overview 1 RT 1: 11068-14048 bp Neighborhood of RT #1 [11068, 14092] RVT_N RVT-GII SRAP Feature: gene Location: 11068-11547 bp Feature: gene Location: 11706-11975 bp Feature: gene Location: 12124-13179 bp Feature: domain Description: RVT_N Location: 12169-12409 bp Feature: domain Description: RVT_N Location: 1 21 69-1 2409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12457-13105 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2457-1 31 05 bp Feature: gene Location: 13217-13405 bp Feature: gene Location: 13718-14092 bp Feature: domain Description: SRAP Location: 13721-14048 bp Feature: domain Description: SRAP Location: 1 3721 -1 4048 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, SRAP (pfam02586)

Seq: PLZY01000294.1 Acidobacteriaceae bacterium isolate palsa_353 73.20120700_P3D.1_contig_3306, whole genome shotgun sequence (36228 bp)
Overview 1 RT 1: 2-3797 bp Neighborhood of RT #1 [2, 3850] RVT-GII GIIM Pur_ac_phosph_N MauG Feature: gene Location: 2-322 bp Feature: gene Location: 832-1581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 850-1135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 850-1135 bp Feature: domain Description: GIIM Note: maturase Location: 1186-1414 bp Feature: domain Description: GIIM Note: maturase Location: 1186-1414 bp Feature: gene Location: 1682-2107 bp Feature: domain Description: Pur_ac_phosph_N Location: 1817-2093 bp Feature: domain Description: Pur_ac_phosph_N Location: 1817-2 093 bp Feature: gene Location: 2243-3850 bp Feature: domain Description: MauG Location: 2492-3797 bp Feature: domain Description: MauG Location: 2 492 -3797 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Pur_ac_phosph_N (pfam16656), MauG (COG1858)

Seq: PLZY01000212.1 Acidobacteriaceae bacterium isolate palsa_353 73.20120700_P3D.1_contig_3783, whole genome shotgun sequence (5403 bp)
Overview 1 RT 1: 76-5164 bp Neighborhood of RT #1 [76, 5181] RVT-GII RVT-GII GIIM GH36 PKD Tagatose_6_P_K Feature: gene Location: 76-294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79-268 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79-268 bp Feature: gene Location: 338-853 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 341-443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 41-443 bp Feature: domain Description: GIIM Note: maturase Location: 494-710 bp Feature: domain Description: GIIM Note: maturase Location: 494-710 bp Feature: gene Location: 1223-3721 bp Feature: domain Description: GH36 Location: 2150-3038 bp Feature: domain Description: GH3 6 Location: 2150-3 03 8 bp Feature: domain Description: PKD Location: 3428-3605 bp Feature: domain Description: PKD Location: 3 428-3 605 bp Feature: gene Location: 3745-5181 bp Feature: domain Description: Tagatose_6_P_K Location: 3895-5164 bp Feature: domain Description: Tagatose_6_P_K Location: 3 895-5164 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), GH36 (cd14791), PKD (smart00089), Tagatose_6_P_K (pfam08013)

Seq: PLZY01000029.1 Acidobacteriaceae bacterium isolate palsa_353 73.20120700_P3D.1_contig_4629, whole genome shotgun sequence (10494 bp)
Overview 1 RT 1: 910-5421 bp Neighborhood of RT #1 [910, 5438] RVT-GII GIIM group_II_RT_mat RVT-GII GIIM HTH_17 Feature: gene Location: 910-1272 bp Feature: gene Location: 1186-1539 bp Feature: gene Location: 1563-2867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1839-2463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1839-24 63 bp Feature: domain Description: GIIM Note: maturase Location: 2559-2775 bp Feature: domain Description: GIIM Note: maturase Location: 2559-2775 bp Feature: gene Location: 3073-3474 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3250-3427 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3250-34 27 bp Feature: gene Location: 3435-4460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3438-4035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 38-4 035 bp Feature: domain Description: GIIM Note: maturase Location: 4086-4302 bp Feature: domain Description: GIIM Note: maturase Location: 4 086-4 302 bp Feature: gene Location: 4524-4700 bp Feature: gene Location: 5055-5438 bp Feature: domain Description: HTH_17 Location: 5286-5421 bp Feature: domain Description: HTH_17 Location: 5286-54 21 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), group_II_RT_mat (TIGR04416), HTH_17 (pfam12728)