myRT

myRT report for GCA_003152515.1_20120700_P2D

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Seq: PMAH01000038.1 Gammaproteobacteria bacterium isolate palsa_1221 73.20120700_P2D.31_contig_10805, whole genome shotgun sequence (3870 bp)
Overview 1 RT 1: 1044-3606 bp Neighborhood of RT #1 [1044, 3869] QdoI PRK09290 RVT-GII Feature: gene Location: 1044-1394 bp Feature: domain Description: QdoI Location: 1137-1365 bp Feature: domain Description: QdoI Location: 1 1 37-1 365 bp Feature: gene Location: 1433-2824 bp Feature: domain Description: PRK09290 Location: 1589-2810 bp Feature: domain Description: PRK09290 Location: 1 589-281 0 bp Feature: gene Location: 3282-3869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3303-3606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3303-3606 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT QdoI (COG1917), PRK09290 (allantoate amidohydrolase; Reviewed), RVT-GII

Seq: PMAH01000165.1 Gammaproteobacteria bacterium isolate palsa_1221 73.20120700_P2D.31_contig_11924, whole genome shotgun sequence (5347 bp)
Overview 1 RT 1: 3684-5044 bp Neighborhood of RT #1 [3684, 5346] RVT-GII GIIM Feature: gene Location: 3684-3911 bp Feature: gene Location: 4279-4419 bp Feature: gene Location: 4606-5346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4609-4870 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4609-4870 bp Feature: domain Description: GIIM Note: maturase Location: 4942-5044 bp Feature: domain Description: GIIM Note: maturase Location: 4942 -5044 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PMAH01000011.1 Gammaproteobacteria bacterium isolate palsa_1221 73.20120700_P2D.31_contig_134, whole genome shotgun sequence (7041 bp)
Overview 1 RT 1: 129-2090 bp Neighborhood of RT #1 [129, 2293] RVT-GII Methyltransf_25 Feature: gene Location: 129-992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 540-954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 540-954 bp Feature: gene Location: 1049-1198 bp Feature: gene Location: 1586-2293 bp Feature: domain Description: Methyltransf_25 Location: 1823-2090 bp Feature: domain Description: Methyltransf_25 Location: 1823 -2090 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Methyltransf_25 (pfam13649)

Seq: PMAH01000028.1 Gammaproteobacteria bacterium isolate palsa_1221 73.20120700_P2D.31_contig_14944, whole genome shotgun sequence (6774 bp)
Overview 1 RT 1: 3756-6768 bp Neighborhood of RT #1 [3756, 6773] IstB_IS21 RVT-GII Feature: gene Location: 3756-4241 bp Feature: gene Location: 4274-5041 bp Feature: domain Description: IstB_IS21 Location: 4445-4967 bp Feature: domain Description: IstB_IS21 Location: 4 4 4 5-4 967 bp Feature: gene Location: 6012-6773 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6216-6768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6216-6768 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IstB_IS21 (pfam01695), RVT-GII

Seq: PMAH01000152.1 Gammaproteobacteria bacterium isolate palsa_1221 73.20120700_P2D.31_contig_16148, whole genome shotgun sequence (11262 bp)
Overview 1 RT 1: 3-2916 bp Neighborhood of RT #1 [3, 2916] RVT-GII GIIM PHA02517 Feature: gene Location: 3-203 bp Feature: gene Location: 550-1779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 754-1411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75 4-1411 bp Feature: domain Description: GIIM Note: maturase Location: 1495-1708 bp Feature: domain Description: GIIM Note: maturase Location: 1495 -1708 bp Feature: gene Location: 1806-2717 bp Feature: domain Description: PHA02517 Location: 1971-2676 bp Feature: domain Description: PHA025 17 Location: 1971-2676 bp Feature: gene Location: 2728-2916 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: PMAH01000301.1 Gammaproteobacteria bacterium isolate palsa_1221 73.20120700_P2D.31_contig_2350, whole genome shotgun sequence (8123 bp)
Overview 1 RT 1: 3657-6825 bp Neighborhood of RT #1 [3657, 6825] Gluconate_2-dh3 PRC PRC RVT-GII Feature: gene Location: 3657-4418 bp Feature: domain Description: Gluconate_2-dh3 Location: 3858-4314 bp Feature: domain Description: Gluconate_2-dh3 Location: 3858-4314 bp Feature: gene Location: 4455-5465 bp Feature: domain Description: PRC Location: 4680-4794 bp Feature: domain Description: PRC Location: 46 80-4794 bp Feature: domain Description: PRC Location: 5160-5262 bp Feature: domain Description: PRC Location: 516 0-526 2 bp Feature: gene Location: 5526-6005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5547-5913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5547-5913 bp Feature: gene Location: 6088-6279 bp Feature: gene Location: 6334-6825 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gluconate_2-dh3 (pfam13618), PRC (pfam05239), RVT-GII

Seq: PMAH01000077.1 Gammaproteobacteria bacterium isolate palsa_1221 73.20120700_P2D.31_contig_2594, whole genome shotgun sequence (9920 bp)
Overview 1 RT 1: 6749-9912 bp Neighborhood of RT #1 [6749, 9917] ligand_gated_channel CirA RVT-GII Feature: gene Location: 6749-7351 bp Feature: domain Description: ligand_gated_channel Location: 6845-7334 bp Feature: domain Description: ligand_gated_channel Location: 6845-7 334 bp Feature: gene Location: 7218-8963 bp Feature: domain Description: CirA Location: 7251-8892 bp Feature: domain Description: CirA Location: 7 251-8892 bp Feature: gene Location: 9246-9917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9342-9912 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9342-9912 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ligand_gated_channel (cd01347), CirA (COG1629), RVT-GII

Seq: PMAH01000014.1 Gammaproteobacteria bacterium isolate palsa_1221 73.20120700_P2D.31_contig_3613, whole genome shotgun sequence (16076 bp)
Overview 1 RT 1: 1787-5377 bp Neighborhood of RT #1 [1787, 5463] DDE_Tnp_1_4 group_II_RT_mat RVT-GII GIIM DDE_Tnp_IS66 DDE_Tnp_IS66_C DDE_3 Feature: gene Location: 1787-2146 bp Feature: domain Description: DDE_Tnp_1_4 Location: 1892-2123 bp Feature: domain Description: DDE_Tnp_1_4 Location: 18 92-2123 bp Feature: gene Location: 2139-2531 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2151-2388 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2151-238 8 bp Feature: gene Location: 2612-3865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2819-3473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28 19-3473 bp Feature: domain Description: GIIM Note: maturase Location: 3557-3764 bp Feature: domain Description: GIIM Note: maturase Location: 3557-3764 bp Feature: gene Location: 4560-5051 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4590-4857 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4590-48 57 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4878-4986 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 48 78 -498 6 bp Feature: gene Location: 5272-5463 bp Feature: domain Description: DDE_3 Location: 5278-5377 bp Feature: domain Description: DDE_3 Location: 5278 -5377 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_4 (pfam13701), group_II_RT_mat (TIGR04416), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), DDE_3 (pfam13358)

Seq: PMAH01000157.1 Gammaproteobacteria bacterium isolate palsa_1221 73.20120700_P2D.31_contig_5842, whole genome shotgun sequence (7835 bp)
Overview 1 RT 1: 5394-7430 bp Neighborhood of RT #1 [5394, 7430] CytC553 DUF2934 RVT-GII Feature: gene Location: 5394-6047 bp Feature: domain Description: CytC553 Location: 5484-5811 bp Feature: domain Description: CytC553 Location: 5484-5811 bp Feature: gene Location: 6172-6453 bp Feature: domain Description: DUF2934 Location: 6304-6412 bp Feature: domain Description: DUF29 34 Location: 6304-6412 bp Feature: gene Location: 6623-7111 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6686-6983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6686-69 83 bp Feature: gene Location: 7146-7430 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CytC553 (COG2863), DUF2934 (pfam11154), RVT-GII