myRT

myRT report for GCA_003152595.1_20120700_P2D

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Seq: PMAM01000040.1 Acidobacterium sp. isolate palsa_343 73.20120700_P2D.11_contig_2506, whole genome shotgun sequence (3614 bp)
Overview 1 RT 1: 1174-3224 bp Neighborhood of RT #1 [1174, 3604] RsmA RVT-GII Feature: gene Location: 1174-1398 bp Feature: domain Description: RsmA Location: 1273-1393 bp Feature: domain Description: RsmA Location: 1 273-1 393 bp Feature: gene Location: 1651-1827 bp Feature: gene Location: 2042-3604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2534-3224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2534-3224 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RsmA (COG0030), RVT-GII

Seq: PMAM01000141.1 Acidobacterium sp. isolate palsa_343 73.20120700_P2D.11_contig_422, whole genome shotgun sequence (41453 bp)
Overview 1 RT 1: 18349-24024 bp Neighborhood of RT #1 [18349, 24038] rpsB tsf RVT-UG5 Acetyltransf_CG SnoaL Feature: gene Location: 18349-19170 bp Feature: domain Description: rpsB Location: 18352-19048 bp Feature: domain Description: rpsB Location: 18352 -19048 bp Feature: gene Location: 19596-20111 bp Feature: domain Description: tsf Location: 19602-20055 bp Feature: domain Description: tsf Location: 19602 -2 0055 bp Feature: gene Location: 20282-23302 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 20804-21269 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2 0804-2 12 69 bp Feature: gene Location: 23360-23638 bp Feature: domain Description: Acetyltransf_CG Location: 23393-23618 bp Feature: domain Description: Acetyltransf_CG Location: 2 3393-2 3618 bp Feature: gene Location: 23640-24038 bp Feature: domain Description: SnoaL Location: 23664-24024 bp Feature: domain Description: SnoaL Location: 2 3664-2 402 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsB (PRK12311), tsf (TIGR00116), RVT-UG5, Acetyltransf_CG (pfam14542), SnoaL (pfam07366)