myRT

myRT report for GCA_003153015.1_20120700_E3M

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Seq: PMBS01000137.1 Myxococcales bacterium isolate fen_1144 73.20120700_E3M.35_contig_104758, whole genome shotgun sequence (38303 bp)
Overview 1 RT 1: 24005-29904 bp Neighborhood of RT #1 [24005, 29904] TIGR04141 RVT-UG28b Feature: gene Location: 24005-25594 bp Feature: domain Description: TIGR04141 Location: 24041-25580 bp Feature: domain Description: TIGR041 41 Location: 24041 -25580 bp Feature: gene Location: 25683-26480 bp Feature: gene Location: 26928-28769 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 27345-28029 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 27345-28029 bp Feature: gene Location: 28874-29008 bp Feature: gene Location: 29080-29904 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR04141 (sporadically distributed protein, TIGR04141 family), RVT-UG28b

Seq: PMBS01000082.1 Myxococcales bacterium isolate fen_1144 73.20120700_E3M.35_contig_2580, whole genome shotgun sequence (34576 bp)
Overview 1 RT 1: 27183-31755 bp Neighborhood of RT #1 [27183, 31755] AmtB RVT-GII GIIM HNHc Feature: gene Location: 27183-28493 bp Feature: domain Description: AmtB Location: 27186-28395 bp Feature: domain Description: AmtB Location: 2 7186-2 8395 bp Feature: gene Location: 28657-28860 bp Feature: gene Location: 28954-30216 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29158-29848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 9158-2 9848 bp Feature: domain Description: GIIM Note: maturase Location: 29920-30130 bp Feature: domain Description: GIIM Note: maturase Location: 2 992 0-30130 bp Feature: gene Location: 30838-31392 bp Feature: domain Description: HNHc Note: nucleases Location: 30997-31156 bp Feature: domain Description: HNHc Note: nucleases Location: 30997-31156 bp Feature: gene Location: 31405-31755 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AmtB (COG0004), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: PMBS01000257.1 Myxococcales bacterium isolate fen_1144 73.20120700_E3M.35_contig_384922, whole genome shotgun sequence (4546 bp)
Overview 1 RT 1: 213-3058 bp Neighborhood of RT #1 [213, 3117] COG2442 DUF5615 RVT-GII GIIM DUF4230 Feature: gene Location: 213-479 bp Feature: domain Description: COG2442 Location: 255-462 bp Feature: domain Description: COG2442 Location: 255-462 bp Feature: gene Location: 460-822 bp Feature: domain Description: DUF5615 Location: 469-646 bp Feature: domain Description: DUF5615 Location: 469-646 bp Feature: gene Location: 1023-1568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1065-1479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1065-1479 bp Feature: gene Location: 1728-1982 bp Feature: domain Description: GIIM Note: maturase Location: 1740-1899 bp Feature: domain Description: GIIM Note: maturase Location: 1740-1899 bp Feature: gene Location: 2476-3117 bp Feature: domain Description: DUF4230 Location: 2632-3058 bp Feature: domain Description: DUF423 0 Location: 263 2-3 058 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2442 (Uncharacterized conserved protein, DUF433 family ), DUF5615 (pfam18480), RVT-GII, GIIM (pfam08388), DUF4230 (pfam14014)