myRT

myRT report for GCA_003153555.1_20120700_P3D

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Seq: PLZS01000065.1 Candidatus Melainabacteria bacterium isolate palsa_1080 73.20120700_P3D.118_contig_104780, whole genome shotgun sequence (9358 bp)
Overview 1 RT 1: 1848-5669 bp Neighborhood of RT #1 [1848, 5683] RVT-GII RVT-GII GIIM GIIM LRR_RI KOG3864 Feature: gene Location: 1848-2030 bp Feature: gene Location: 2043-2384 bp Feature: gene Location: 2480-2683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2528-2672 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2528-2672 bp Feature: gene Location: 2689-3591 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2695-3187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2695-31 87 bp Feature: domain Description: GIIM Note: maturase Location: 3271-3499 bp Feature: domain Description: GIIM Note: maturase Location: 3271 -3499 bp Feature: gene Location: 3634-3954 bp Feature: domain Description: GIIM Note: maturase Location: 3640-3724 bp Feature: domain Description: GIIM Note: maturase Location: 3640-3724 bp Feature: gene Location: 4346-5683 bp Feature: domain Description: LRR_RI Location: 4802-5405 bp Feature: domain Description: LRR_RI Location: 4802-5405 bp Feature: domain Description: KOG3864 Location: 5408-5669 bp Feature: domain Description: KOG3864 Location: 5408-5669 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), LRR_RI (smart00368), KOG3864 (KOG3864, Uncharacterized conserved protein )

Seq: PLZS01000041.1 Candidatus Melainabacteria bacterium isolate palsa_1080 73.20120700_P3D.118_contig_14198, whole genome shotgun sequence (60328 bp)
Overview 1 RT 1: 32506-39271 bp Neighborhood of RT #1 [32506, 39357] MscK RVT-Retrons NHEJ_ligase_prk KU_like Feature: gene Location: 32506-34005 bp Feature: gene Location: 34096-34893 bp Feature: domain Description: MscK Location: 34582-34807 bp Feature: domain Description: MscK Location: 34582 -34807 bp Feature: gene Location: 34896-35741 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 35004-35559 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 35004-35559 bp Feature: gene Location: 36114-38417 bp Feature: domain Description: NHEJ_ligase_prk Location: 36330-38364 bp Feature: domain Description: NHEJ_ligase_prk Location: 36330-38364 bp Feature: gene Location: 38509-39357 bp Feature: domain Description: KU_like Location: 38521-39271 bp Feature: domain Description: KU_like Location: 3852 1-392 71 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MscK (COG3264), RVT-Retrons, NHEJ_ligase_prk (TIGR02776), KU_like (cd00789)

Seq: PLZS01000197.1 Candidatus Melainabacteria bacterium isolate palsa_1080 73.20120700_P3D.118_contig_17329, whole genome shotgun sequence (44310 bp)
Overview 1 RT 1: 17091-20409 bp Neighborhood of RT #1 [17091, 20409] DDE_Tnp_Tn3 RVT-GII Feature: gene Location: 17091-17834 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 17094-17754 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 17094-17754 bp Feature: gene Location: 18006-18317 bp Feature: gene Location: 18344-19822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18761-19451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18761-19451 bp Feature: gene Location: 19922-20122 bp Feature: gene Location: 20119-20409 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_Tn3 (pfam01526), RVT-GII

Seq: PLZS01000085.1 Candidatus Melainabacteria bacterium isolate palsa_1080 73.20120700_P3D.118_contig_57698, whole genome shotgun sequence (40548 bp)
Overview 1 RT 1: 1-2724 bp Neighborhood of RT #1 [1, 2747] RVT-GII GIIM PRK14328 Feature: gene Location: 1-741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 -232 bp Feature: domain Description: GIIM Note: maturase Location: 292-520 bp Feature: domain Description: GIIM Note: maturase Location: 292-520 bp Feature: gene Location: 1085-1297 bp Feature: gene Location: 1323-2747 bp Feature: domain Description: PRK14328 Location: 1428-2724 bp Feature: domain Description: PRK14 328 Location: 14 28-2724 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK14328 ((dimethylallyl)adenosine tRNA methylthiotransferase; Provisional)

Seq: PLZS01000017.1 Candidatus Melainabacteria bacterium isolate palsa_1080 73.20120700_P3D.118_contig_75750, whole genome shotgun sequence (3494 bp)
Overview 1 RT 1: 2454-3453 bp Neighborhood of RT #1 [2454, 3491] DUF5372 RVT-GII Feature: gene Location: 2454-2789 bp Feature: gene Location: 2872-3144 bp Feature: domain Description: DUF5372 Location: 2905-3109 bp Feature: domain Description: DUF5 372 Location: 2905 -3109 bp Feature: gene Location: 3147-3491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3162-3453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3162-345 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5372 (pfam17342), RVT-GII

Seq: PLZS01000187.1 Candidatus Melainabacteria bacterium isolate palsa_1080 73.20120700_P3D.118_contig_90694, whole genome shotgun sequence (20796 bp)
Overview 1 RT 1: 2149-10580 bp Neighborhood of RT #1 [2149, 10580] YhcG BHL YeeA RVT-UG5 YeeA YeeA Feature: gene Location: 2149-3258 bp Feature: domain Description: YhcG Location: 2608-3058 bp Feature: domain Description: YhcG Location: 26 08-3058 bp Feature: domain Description: BHL Location: 3061-3244 bp Feature: domain Description: BHL Location: 306 1-3244 bp Feature: gene Location: 3508-5259 bp Feature: domain Description: YeeA Location: 3565-5125 bp Feature: domain Description: YeeA Location: 356 5-5125 bp Feature: gene Location: 5261-8221 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 5723-6188 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 5723-6 188 bp Feature: gene Location: 8218-10035 bp Feature: domain Description: YeeA Location: 8803-9301 bp Feature: domain Description: YeeA Location: 8803-9301 bp Feature: domain Description: YeeA Location: 9598-9958 bp Feature: domain Description: YeeA Location: 9598-9958 bp Feature: gene Location: 10035-10580 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhcG (COG4804), BHL (smart00411), YeeA (COG1002), RVT-UG5