myRT

myRT report for GCA_003153975.1_20120700_E3M

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Seq: PMBZ01000239.1 Rhizobiales bacterium isolate fen_921 73.20120700_E3M.239_contig_155266, whole genome shotgun sequence (23658 bp)
Overview 1 RT 1: 8663-16220 bp Neighborhood of RT #1 [8663, 19084] Pentapeptide_3 Pentapeptide_3 RVT-Retrons WGR_DNA_ligase Feature: gene Location: 8663-11314 bp Feature: domain Description: Pentapeptide_3 Location: 8924-9032 bp Feature: domain Description: Pentapeptide_3 Location: 8924-9032 bp Feature: domain Description: Pentapeptide_3 Location: 9266-9344 bp Feature: domain Description: Pentapeptide_3 Location: 9266-9344 bp Feature: gene Location: 11544-11681 bp Feature: gene Location: 11687-13558 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12275-12896 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 2275-1 2896 bp Feature: gene Location: 14328-15968 bp Feature: gene Location: 15968-19084 bp Feature: domain Description: WGR_DNA_ligase Location: 15986-16220 bp Feature: domain Description: WGR_DNA_ligase Location: 1 5986-1 6220 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Pentapeptide_3 (pfam13576), RVT-Retrons, WGR_DNA_ligase (cd07998)

Seq: PMBZ01000099.1 Rhizobiales bacterium isolate fen_921 73.20120700_E3M.239_contig_240565, whole genome shotgun sequence (22980 bp)
Overview 1 RT 1: 15678-20675 bp Neighborhood of RT #1 [15678, 20713] RVT-GII PinE COG4249 WD40 WD40 Feature: gene Location: 15678-15866 bp Feature: gene Location: 15974-16207 bp Feature: gene Location: 16444-17214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16450-17026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16450-1702 6 bp Feature: gene Location: 17752-18342 bp Feature: domain Description: PinE Location: 17776-18322 bp Feature: domain Description: PinE Location: 17776-1832 2 bp Feature: gene Location: 18539-20713 bp Feature: domain Description: COG4249 Location: 18614-19274 bp Feature: domain Description: COG42 49 Location: 18614-192 74 bp Feature: domain Description: WD40 Location: 19397-19622 bp Feature: domain Description: WD40 Location: 19397-1962 2 bp Feature: domain Description: WD40 Location: 20108-20675 bp Feature: domain Description: WD40 Location: 2 0108-2 0675 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PinE (COG1961), COG4249 (Uncharacterized protein, contains caspase domain ), WD40 (smart00320)

Seq: PMBZ01000067.1 Rhizobiales bacterium isolate fen_921 73.20120700_E3M.239_contig_73699, whole genome shotgun sequence (43013 bp)
Overview 1 RT 1: 26893-30268 bp Neighborhood of RT #1 [26893, 30306] Avd_like RVT-DGRs DUF820 YfbR Feature: gene Location: 26893-27033 bp Feature: gene Location: 27281-27646 bp Feature: domain Description: Avd_like Location: 27329-27620 bp Feature: domain Description: Avd_like Location: 273 29-27620 bp Feature: gene Location: 27621-28748 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 27840-28479 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 27840-28479 bp Feature: gene Location: 28758-29360 bp Feature: domain Description: DUF820 Location: 28890-29313 bp Feature: domain Description: DUF820 Location: 28890-293 13 bp Feature: gene Location: 29593-30306 bp Feature: domain Description: YfbR Location: 29719-30268 bp Feature: domain Description: YfbR Location: 29719-3 0268 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, DUF820, YfbR (COG1896)

Seq: PMBZ01000137.1 Rhizobiales bacterium isolate fen_921 73.20120700_E3M.239_contig_90750, whole genome shotgun sequence (7066 bp)
Overview 1 RT 1: 3741-6956 bp Neighborhood of RT #1 [3741, 7063] DDE_Tnp_IS1595 COG5659 UDP_GE_SDE_e RVT-GII COG3415 Feature: gene Location: 3741-4727 bp Feature: domain Description: DDE_Tnp_IS1595 Location: 3771-4203 bp Feature: domain Description: DDE_Tnp_IS1595 Location: 3771-4 203 bp Feature: domain Description: COG5659 Location: 4299-4683 bp Feature: domain Description: COG5659 Location: 4 299-4 683 bp Feature: gene Location: 4834-5856 bp Feature: domain Description: UDP_GE_SDE_e Location: 4837-5845 bp Feature: domain Description: UDP_GE_SDE_e Location: 4 837-584 5 bp Feature: gene Location: 6132-6608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6201-6372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6201-6372 bp Feature: gene Location: 6704-7063 bp Feature: domain Description: COG3415 Location: 6707-6956 bp Feature: domain Description: COG34 15 Location: 6707-6956 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS1595 (pfam12762), COG5659 (SRSO17 transposase ), UDP_GE_SDE_e (cd05253), RVT-GII, COG3415 (Transposase )