myRT

myRT report for GCA_003154115.1_20120700_E3M

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Seq: PMCF01000043.1 Anaerolineae bacterium isolate fen_1063 73.20120700_E3M.207_contig_104996, whole genome shotgun sequence (17223 bp)
Overview 1 RT 1: 14503-17122 bp Neighborhood of RT #1 [14503, 17122] Y1_Tnp RVT-GII GIIM Feature: gene Location: 14503-14874 bp Feature: gene Location: 15023-15418 bp Feature: domain Description: Y1_Tnp Location: 15044-15395 bp Feature: domain Description: Y1 _Tnp Location: 1 5044-1 5395 bp Feature: gene Location: 15772-16845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15889-16471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5889-1 6471 bp Feature: domain Description: GIIM Note: maturase Location: 16561-16759 bp Feature: domain Description: GIIM Note: maturase Location: 1 6561 -1 6759 bp Feature: gene Location: 16724-17122 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Y1_Tnp (pfam01797), RVT-GII, GIIM (pfam08388)

Seq: PMCF01000459.1 Anaerolineae bacterium isolate fen_1063 73.20120700_E3M.207_contig_129121, whole genome shotgun sequence (21992 bp)
Overview 1 RT 1: 8329-14857 bp Neighborhood of RT #1 [8329, 14859] STKc_PknB_like LTD PRK12740 RVT-GII PRK13685 PRK13685 PRK13685 PRK13685 Feature: gene Location: 8329-9744 bp Feature: domain Description: STKc_PknB_like Location: 8419-9199 bp Feature: domain Description: STKc_PknB_like Location: 8419-9199 bp Feature: domain Description: LTD Location: 9454-9703 bp Feature: domain Description: LTD Location: 9454-9703 bp Feature: gene Location: 9962-12040 bp Feature: domain Description: PRK12740 Location: 10007-11990 bp Feature: domain Description: PRK12 740 Location: 10007-11990 bp Feature: gene Location: 12302-12439 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12311-12407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 311-12 407 bp Feature: gene Location: 12613-13746 bp Feature: domain Description: PRK13685 Location: 12631-13357 bp Feature: domain Description: PRK13685 Location: 12 631-13357 bp Feature: domain Description: PRK13685 Location: 13531-13726 bp Feature: domain Description: PRK13685 Location: 13531-1372 6 bp Feature: gene Location: 13837-14859 bp Feature: domain Description: PRK13685 Location: 13846-14371 bp Feature: domain Description: PRK13685 Location: 13846-14371 bp Feature: domain Description: PRK13685 Location: 14482-14857 bp Feature: domain Description: PRK13685 Location: 14482 -14857 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT STKc_PknB_like (cd14014), LTD (pfam00932), PRK12740 (elongation factor G-like protein EF-G2), RVT-GII, PRK13685 (hypothetical protein; Provisional)

Seq: PMCF01000136.1 Anaerolineae bacterium isolate fen_1063 73.20120700_E3M.207_contig_14372, whole genome shotgun sequence (48652 bp)
Overview 1 RT 1: 38954-44806 bp Neighborhood of RT #1 [38954, 44814] Era_like COG3597 RVT-CRISPR Cas1_I-II-III RNase_HI_like Feature: gene Location: 38954-40642 bp Feature: gene Location: 40751-41890 bp Feature: domain Description: Era_like Location: 40937-41342 bp Feature: domain Description: Era_like Location: 4093 7-413 42 bp Feature: domain Description: COG3597 Location: 41441-41762 bp Feature: domain Description: COG3 597 Location: 41441-41762 bp Feature: gene Location: 42110-43192 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 42512-43136 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 42512-43 13 6 bp Feature: gene Location: 43289-44320 bp Feature: domain Description: Cas1_I-II-III Location: 43298-44282 bp Feature: domain Description: Cas1_I-II-III Location: 43 298-44282 bp Feature: gene Location: 44410-44814 bp Feature: domain Description: RNase_HI_like Location: 44431-44806 bp Feature: domain Description: RNase_HI_like Location: 4443 1-44806 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Era_like (cd00880), COG3597 (Uncharacterized conserved protein, DUF697 family ), RVT-CRISPR, Cas1_I-II-III (cl00656), RNase_HI_like (cd09279)

Seq: PMCF01000209.1 Anaerolineae bacterium isolate fen_1063 73.20120700_E3M.207_contig_401896, whole genome shotgun sequence (13614 bp)
Overview 1 RT 1: 1-5457 bp Neighborhood of RT #1 [1, 5457] YfmG RVT-DGRs COG5635 pfam03781 Feature: gene Location: 1-498 bp Feature: domain Description: YfmG Location: 88-223 bp Feature: domain Description: YfmG Location: 88-223 bp Feature: gene Location: 585-1649 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 774-1419 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 774 -14 19 bp Feature: gene Location: 1655-4717 bp Feature: domain Description: COG5635 Location: 2282-3452 bp Feature: domain Description: COG5635 Location: 2282-34 52 bp Feature: domain Description: pfam03781 Location: 3881-4703 bp Feature: domain Description: pfam03781 Location: 3881-4 703 bp Feature: gene Location: 5098-5457 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), RVT-DGRs, COG5635 (Predicted NTPase, NACHT family domain ), pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1)

Seq: PMCF01000122.1 Anaerolineae bacterium isolate fen_1063 73.20120700_E3M.207_contig_628957, whole genome shotgun sequence (12996 bp)
Overview 1 RT 1: 10154-12833 bp Neighborhood of RT #1 [10154, 12847] Csx1_III-U RVT-CRISPR TIGR02436 Feature: gene Location: 10154-10951 bp Feature: domain Description: Csx1_III-U Location: 10751-10925 bp Feature: domain Description: Csx1_III-U Location: 1075 1-10925 bp Feature: gene Location: 11098-11226 bp Feature: gene Location: 11304-12257 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 11505-12147 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 115 05 -12147 bp Feature: gene Location: 12494-12847 bp Feature: domain Description: TIGR02436 Location: 12515-12833 bp Feature: domain Description: TIGR02436 Location: 125 15 -12833 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Csx1_III-U (cl21570), RVT-CRISPR, TIGR02436 (four helix bundle protein)