myRT

myRT report for GCA_003154895.1_20120600_S3S

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Seq: PMEX01000064.1 Methylocapsa sp. isolate bog_920 73.20120600_S3S.5_contig_14455, whole genome shotgun sequence (2870 bp)
Overview 1 RT 1: 1480-2869 bp Neighborhood of RT #1 [1480, 2868] RVT-GII Feature: gene Location: 1480-1665 bp Feature: gene Location: 1848-2087 bp Feature: gene Location: 2305-2868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2641-2869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2641 -2869 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PMEX01000040.1 Methylocapsa sp. isolate bog_920 73.20120600_S3S.5_contig_15568, whole genome shotgun sequence (2562 bp)
Overview 1 RT 1: 1-2561 bp Neighborhood of RT #1 [1, 2560] RVT-UG17 YfmG Feature: gene Location: 1-381 bp Feature: gene Location: 450-1781 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 789-1182 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 789-1182 bp Feature: gene Location: 1932-2099 bp Feature: gene Location: 2216-2560 bp Feature: domain Description: YfmG Location: 2249-2561 bp Feature: domain Description: YfmG Location: 2 2 49-2 561 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17, YfmG (COG1262)

Seq: PMEX01000085.1 Methylocapsa sp. isolate bog_920 73.20120600_S3S.5_contig_21984, whole genome shotgun sequence (2679 bp)
Overview 1 RT 1: 717-2299 bp Neighborhood of RT #1 [717, 2676] DDE_3 RVT-GII Feature: gene Location: 717-1337 bp Feature: domain Description: DDE_3 Location: 771-1221 bp Feature: domain Description: DDE_3 Location: 771-1221 bp Feature: gene Location: 1557-1733 bp Feature: gene Location: 1840-2676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1843-2299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1843 -2299 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), RVT-GII

Seq: PMEX01000474.1 Methylocapsa sp. isolate bog_920 73.20120600_S3S.5_contig_31972, whole genome shotgun sequence (2997 bp)
Overview 1 RT 1: 1-2069 bp Neighborhood of RT #1 [1, 2797] RVT-GII DUF5372 PinE Zn_ribbon_recom Feature: gene Location: 1-126 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22-127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22-127 bp Feature: gene Location: 150-419 bp Feature: domain Description: DUF5372 Location: 162-390 bp Feature: domain Description: DUF5372 Location: 162-390 bp Feature: gene Location: 896-2797 bp Feature: domain Description: PinE Location: 944-1568 bp Feature: domain Description: PinE Location: 94 4 -1568 bp Feature: domain Description: Zn_ribbon_recom Location: 1892-2069 bp Feature: domain Description: Zn_ribbon_recom Location: 1892-2069 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DUF5372 (pfam17342), PinE (COG1961), Zn_ribbon_recom (pfam13408)

Seq: PMEX01000308.1 Methylocapsa sp. isolate bog_920 73.20120600_S3S.5_contig_8360, whole genome shotgun sequence (4966 bp)
Overview 1 RT 1: 1-2636 bp Neighborhood of RT #1 [1, 2668] RVT-GII Phage_int_SAM_1 INT_RitC_C_like INT_RitB_C_like Feature: gene Location: 1-615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 370-613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 370-613 bp Feature: gene Location: 732-1730 bp Feature: domain Description: Phage_int_SAM_1 Location: 780-1020 bp Feature: domain Description: Phage_int_SAM_1 Location: 780-1020 bp Feature: domain Description: INT_RitC_C_like Location: 1113-1650 bp Feature: domain Description: INT_RitC_C_like Location: 1113-165 0 bp Feature: gene Location: 1727-2668 bp Feature: domain Description: INT_RitB_C_like Location: 2036-2636 bp Feature: domain Description: INT_RitB_C_like Location: 2036-2636 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), INT_RitB_C_like (cd00797)