myRT

myRT report for GCA_003155115.1_20120600_S3D

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Seq: PMFK01000142.1 Methylocystaceae bacterium isolate bog_918 73.20120600_S3D.22_contig_5032, whole genome shotgun sequence (7609 bp)
Overview 1 RT 1: 998-5678 bp Neighborhood of RT #1 [998, 6832] SDR_subfam_1 bicupin_oxalic RVT-GII GIIM PinE Feature: gene Location: 998-1879 bp Feature: domain Description: SDR_subfam_1 Location: 1034-1865 bp Feature: domain Description: SDR_subfam_1 Location: 1 034-1 865 bp Feature: gene Location: 1988-3232 bp Feature: domain Description: bicupin_oxalic Location: 2117-3224 bp Feature: domain Description: bicupin_oxalic Location: 21 1 7-3224 bp Feature: gene Location: 3709-4500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3715-4066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 371 5-4066 bp Feature: domain Description: GIIM Note: maturase Location: 4114-4342 bp Feature: domain Description: GIIM Note: maturase Location: 41 1 4-4342 bp Feature: gene Location: 4509-4883 bp Feature: gene Location: 5045-6832 bp Feature: domain Description: PinE Location: 5093-5678 bp Feature: domain Description: PinE Location: 5093-5678 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SDR_subfam_1 (TIGR03971), bicupin_oxalic (TIGR03404), RVT-GII, GIIM (pfam08388), PinE (COG1961)

Seq: PMFK01000022.1 Methylocystaceae bacterium isolate bog_918 73.20120600_S3D.22_contig_8750, whole genome shotgun sequence (6066 bp)
Overview 1 RT 1: 3-2729 bp Neighborhood of RT #1 [3, 2884] groEL RVT-GII LysR Feature: gene Location: 3-131 bp Feature: domain Description: groEL Location: 6-129 bp Feature: domain Description: groEL Location: 6-12 9 bp Feature: gene Location: 199-432 bp Feature: gene Location: 813-1403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 816-1023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 816-102 3 bp Feature: gene Location: 1408-1746 bp Feature: gene Location: 1835-2884 bp Feature: domain Description: LysR Location: 1880-2729 bp Feature: domain Description: LysR Location: 1880-2 72 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT groEL (PRK12852), RVT-GII, LysR (COG0583)

Seq: PMFK01000053.1 Methylocystaceae bacterium isolate bog_918 73.20120600_S3D.22_contig_8791, whole genome shotgun sequence (17334 bp)
Overview 1 RT 1: 415-3573 bp 2 RT 2: 12224-14684 bp Neighborhood of RT #1 [415, 3857] InsE RVT-GII LomR COG5421 Neighborhood of RT #2 [12224, 14684] PHA02518 Rep_3 RVT-GII fixJ Feature: gene Location: 415-783 bp Feature: domain Description: InsE Location: 448-637 bp Feature: domain Description: InsE Location: 448-63 7 bp Feature: gene Location: 847-1023 bp Feature: gene Location: 1179-1424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1185-1272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1185-1272 bp Feature: gene Location: 1564-2376 bp Feature: domain Description: LomR Location: 1579-2326 bp Feature: domain Description: LomR Location: 1579-23 26 bp Feature: gene Location: 2814-3857 bp Feature: domain Description: COG5421 Location: 2823-3573 bp Feature: domain Description: COG5421 Location: 2823 -3 573 bp Feature: gene Location: 12224-12874 bp Feature: domain Description: PHA02518 Location: 12233-12776 bp Feature: domain Description: PHA02518 Location: 1223 3 -12776 bp Feature: gene Location: 12977-13897 bp Feature: domain Description: Rep_3 Location: 13148-13523 bp Feature: domain Description: Rep_3 Location: 13 148-13 523 bp Feature: gene Location: 13634-13933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13721-13895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 721-13 895 bp Feature: gene Location: 13973-14374 bp Feature: domain Description: fixJ Location: 13985-14357 bp Feature: domain Description: fixJ Location: 13 985-143 57 bp Feature: gene Location: 14460-14684 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, LomR (COG3637), COG5421 (Transposase ), PHA02518 (ParA-like protein; Provisional), Rep_3 (pfam01051), fixJ (PRK09390)