myRT

myRT report for GCA_003156555.1_20120600_S1D

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Seq: PMHG01000086.1 Acidimicrobiaceae bacterium isolate bog_694 73.20120600_S1D.23_contig_19734, whole genome shotgun sequence (8226 bp)
Overview 1 RT 1: 2737-6504 bp Neighborhood of RT #1 [2737, 6504] COG3547 RVT-GII GIIM Feature: gene Location: 2737-3030 bp Feature: gene Location: 3429-4397 bp Feature: domain Description: COG3547 Location: 3450-4257 bp Feature: domain Description: COG3547 Location: 3450-4257 bp Feature: gene Location: 4578-6011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4899-5577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4899-5577 bp Feature: domain Description: GIIM Note: maturase Location: 5655-5880 bp Feature: domain Description: GIIM Note: maturase Location: 5655-5880 bp Feature: gene Location: 6068-6211 bp Feature: gene Location: 6244-6504 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: PMHG01000018.1 Acidimicrobiaceae bacterium isolate bog_694 73.20120600_S1D.23_contig_8820, whole genome shotgun sequence (5124 bp)
Overview 1 RT 1: 191-3864 bp Neighborhood of RT #1 [191, 3864] RVT-GII RVT-GII GIIM PinE Zn_ribbon_recom excise excise Feature: gene Location: 191-1048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197-350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197-350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 356-668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 356-668 bp Feature: domain Description: GIIM Note: maturase Location: 743-944 bp Feature: domain Description: GIIM Note: maturase Location: 743-944 bp Feature: gene Location: 1194-3449 bp Feature: domain Description: PinE Location: 1248-1839 bp Feature: domain Description: PinE Location: 12 48-1839 bp Feature: domain Description: Zn_ribbon_recom Location: 2187-2352 bp Feature: domain Description: Zn_ribbon_recom Location: 2 187-2 352 bp Feature: domain Description: excise Location: 3039-3162 bp Feature: domain Description: excise Location: 3039-3162 bp Feature: domain Description: excise Location: 3255-3369 bp Feature: domain Description: excise Location: 32 55-3369 bp Feature: gene Location: 3514-3864 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), Zn_ribbon_recom (pfam13408), excise (TIGR01764), RVT-GII, GIIM (pfam08388)