myRT

myRT report for GCA_003157015.1_20120600_E3D

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Seq: PMIJ01000166.1 Bacteroidales bacterium isolate fen_957 73.20120600_E3D.48_contig_43668, whole genome shotgun sequence (25174 bp)
Overview 1 RT 1: 4531-12056 bp Neighborhood of RT #1 [4531, 12061] RVT-GII SusD OMP_RagA_SusC Feature: gene Location: 4531-4947 bp Feature: gene Location: 5455-5634 bp Feature: gene Location: 6070-6357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6172-6352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 72-6352 bp Feature: gene Location: 7033-8811 bp Feature: domain Description: SusD Location: 7153-8647 bp Feature: domain Description: SusD Location: 71 53-8647 bp Feature: gene Location: 8837-12061 bp Feature: domain Description: OMP_RagA_SusC Location: 8936-12056 bp Feature: domain Description: OMP_RagA_SusC Location: 8936-1 2056 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, SusD (NF033071), OMP_RagA_SusC (TIGR04056)

Seq: PMIJ01000107.1 Bacteroidales bacterium isolate fen_957 73.20120600_E3D.48_contig_48668, whole genome shotgun sequence (9740 bp)
Overview 1 RT 1: 2-4065 bp Neighborhood of RT #1 [2, 4076] COG4447 COG4447 COG4447 RVT-GII GIIM CarbopepD_reg_2 Feature: gene Location: 2-619 bp Feature: domain Description: COG4447 Location: 26-86 bp Feature: domain Description: COG4447 Location: 2 6-86 bp Feature: domain Description: COG4447 Location: 197-257 bp Feature: domain Description: COG4447 Location: 197-2 57 bp Feature: domain Description: COG4447 Location: 311-506 bp Feature: domain Description: COG4447 Location: 311-506 bp Feature: gene Location: 679-1332 bp Feature: gene Location: 1414-2673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1627-2296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162 7-2 2 96 bp Feature: domain Description: GIIM Note: maturase Location: 2377-2590 bp Feature: domain Description: GIIM Note: maturase Location: 2 377-2 590 bp Feature: gene Location: 3079-3342 bp Feature: gene Location: 3720-4076 bp Feature: domain Description: CarbopepD_reg_2 Location: 3843-4065 bp Feature: domain Description: CarbopepD_reg_2 Location: 3843-4065 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4447 (Uncharacterized protein related to plant photosystem II stability/assembly factor ), RVT-GII, GIIM (pfam08388), CarbopepD_reg_2 (pfam13715)

Seq: PMIJ01000226.1 Bacteroidales bacterium isolate fen_957 73.20120600_E3D.48_contig_57717, whole genome shotgun sequence (8360 bp)
Overview 1 RT 1: 359-3650 bp Neighborhood of RT #1 [359, 3670] RVT-AbiP2 PLDc_unchar6 AbiJ_NTD3 Abi_C Feature: gene Location: 359-1864 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 782-1244 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 782-1244 bp Feature: gene Location: 1935-2672 bp Feature: domain Description: PLDc_unchar6 Location: 1977-2280 bp Feature: domain Description: PLDc_unchar6 Location: 1977-2280 bp Feature: gene Location: 2762-3670 bp Feature: domain Description: AbiJ_NTD3 Location: 2774-3257 bp Feature: domain Description: AbiJ_NTD3 Location: 2774-3 257 bp Feature: domain Description: Abi_C Location: 3407-3650 bp Feature: domain Description: Abi_C Location: 3 407-3 650 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiP2, PLDc_unchar6 (cd09176), AbiJ_NTD3 (pfam18860), Abi_C (pfam14355)