myRT

myRT report for GCA_003157135.1_20120600_E3D

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Seq: PMIO01000064.1 Acidobacteriaceae bacterium isolate fen_304 73.20120600_E3D.28_contig_191255, whole genome shotgun sequence (5002 bp)
Overview 1 RT 1: 962-4424 bp Neighborhood of RT #1 [962, 4597] Phage_portal RVT-GII GIIM Feature: gene Location: 962-1525 bp Feature: gene Location: 1657-2940 bp Feature: domain Description: Phage_portal Location: 1897-2920 bp Feature: domain Description: Phage_portal Location: 1 897-2920 bp Feature: gene Location: 3212-4597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3554-4172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3554-41 72 bp Feature: domain Description: GIIM Note: maturase Location: 4226-4424 bp Feature: domain Description: GIIM Note: maturase Location: 4226-4424 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_portal (pfam04860), RVT-GII, GIIM (pfam08388)

Seq: PMIO01000401.1 Acidobacteriaceae bacterium isolate fen_304 73.20120600_E3D.28_contig_6640, whole genome shotgun sequence (6040 bp)
Overview 1 RT 1: 3479-5666 bp Neighborhood of RT #1 [3479, 6037] RVT-GII Feature: gene Location: 3479-3628 bp Feature: gene Location: 3688-4842 bp Feature: gene Location: 4952-6037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4976-5666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4976-5666 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PMIO01000520.1 Acidobacteriaceae bacterium isolate fen_304 73.20120600_E3D.28_contig_67808, whole genome shotgun sequence (6871 bp)
Overview 1 RT 1: 1291-6646 bp Neighborhood of RT #1 [1291, 6646] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT_N RVT-GII GIIM COG3436 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 Feature: gene Location: 1291-1914 bp Feature: gene Location: 1991-2722 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2108-2552 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2108-2552 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2573-2681 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2573 -2681 bp Feature: gene Location: 2719-4230 bp Feature: RT Description: RVT_N Location: 2785-3028 bp Feature: RT Description: RVT_N Location: 2785-3 028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3073-3718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 073 -3 718 bp Feature: domain Description: GIIM Note: maturase Location: 3775-4006 bp Feature: domain Description: GIIM Note: maturase Location: 3 775-4006 bp Feature: gene Location: 4830-6296 bp Feature: domain Description: COG3436 Location: 4866-5013 bp Feature: domain Description: COG3 43 6 Location: 4866-5013 bp Feature: domain Description: LZ_Tnp_IS66 Location: 5487-5691 bp Feature: domain Description: LZ_Tnp_IS66 Location: 5487-5691 bp Feature: domain Description: zf-IS66 Location: 5718-5841 bp Feature: domain Description: zf-IS66 Location: 5718-5841 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5889-6291 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5889-6291 bp Feature: gene Location: 6290-6646 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG3436 (Transposase ), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005)