myRT

myRT report for GCA_003157795.1_20120600_E1D

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Seq: PMKS01000496.1 Opitutae bacterium isolate fen_1431 73.20120600_E1D.53_contig_186826, whole genome shotgun sequence (4603 bp)
Overview 1 RT 1: 154-4600 bp Neighborhood of RT #1 [154, 4600] Mrr_cat RVT-UG9 Feature: gene Location: 154-315 bp Feature: gene Location: 340-2121 bp Feature: domain Description: Mrr_cat Location: 1696-2044 bp Feature: domain Description: Mrr_cat Location: 1 696-2044 bp Feature: gene Location: 2670-4352 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 2868-3489 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 2868-3489 bp Feature: gene Location: 4349-4600 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mrr_cat (pfam04471), RVT-UG9

Seq: PMKS01000030.1 Opitutae bacterium isolate fen_1431 73.20120600_E1D.53_contig_262691, whole genome shotgun sequence (2727 bp)
Overview 1 RT 1: 30-2618 bp Neighborhood of RT #1 [30, 2629] RVT-GII RVT-GII PRK10529 Feature: gene Location: 30-617 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 534-588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 534-588 bp Feature: gene Location: 713-1726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 722-1223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72 2 -12 2 3 bp Feature: gene Location: 1934-2629 bp Feature: domain Description: PRK10529 Location: 1958-2618 bp Feature: domain Description: PRK1052 9 Location: 1958-2 618 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10529 (DNA-binding transcriptional activator KdpE; Provisional)

Seq: PMKS01000021.1 Opitutae bacterium isolate fen_1431 73.20120600_E1D.53_contig_308424, whole genome shotgun sequence (3636 bp)
Overview 1 RT 1: 492-3634 bp Neighborhood of RT #1 [492, 3634] IPT RVT-GII group_II_RT_mat ChcA_like_SDR_c Feature: gene Location: 492-797 bp Feature: gene Location: 903-1862 bp Feature: domain Description: IPT Location: 1530-1764 bp Feature: domain Description: IPT Location: 153 0-1764 bp Feature: gene Location: 2146-2685 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2263-2428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2263 -2428 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2443-2518 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2443 -2518 bp Feature: gene Location: 2696-2947 bp Feature: domain Description: ChcA_like_SDR_c Location: 2747-2924 bp Feature: domain Description: ChcA_like_SDR_c Location: 2747-2924 bp Feature: gene Location: 3338-3634 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IPT (smart00429), RVT-GII, group_II_RT_mat (TIGR04416), ChcA_like_SDR_c (cd05359)