myRT

myRT report for GCA_003158315.1_20120600_E3D

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Seq: PMIS01000438.1 Acidimicrobiaceae bacterium isolate fen_685 73.20120600_E3D.21_contig_118866, whole genome shotgun sequence (6348 bp)
Overview 1 RT 1: 714-6219 bp Neighborhood of RT #1 [714, 6284] RVT_N RVT-GII group_II_RT_mat PinE Zn_ribbon_recom HTH_MerR-trunc HTH_17 group_II_RT_mat RVT-GII GIIM Feature: gene Location: 714-1757 bp Feature: domain Description: RVT_N Location: 753-993 bp Feature: domain Description: RVT_N Location: 753-993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1050-1578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 050-1 578 bp Feature: gene Location: 2136-2429 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2205-2418 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2205-241 8 bp Feature: gene Location: 2551-2718 bp Feature: gene Location: 2734-3084 bp Feature: gene Location: 3152-5428 bp Feature: domain Description: PinE Location: 3206-3791 bp Feature: domain Description: PinE Location: 3206-3791 bp Feature: domain Description: Zn_ribbon_recom Location: 4139-4307 bp Feature: domain Description: Zn_ribbon_recom Location: 41 39-4307 bp Feature: domain Description: HTH_MerR-trunc Location: 4994-5090 bp Feature: domain Description: HTH_MerR-trunc Location: 4994-5090 bp Feature: domain Description: HTH_17 Location: 5204-5300 bp Feature: domain Description: HTH_1 7 Location: 5204-5300 bp Feature: gene Location: 5553-6284 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 5559-5616 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 5559-561 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5622-5907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5622-5907 bp Feature: domain Description: GIIM Note: maturase Location: 5988-6219 bp Feature: domain Description: GIIM Note: maturase Location: 5988-621 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, group_II_RT_mat (TIGR04416), PinE (COG1961), Zn_ribbon_recom (pfam13408), HTH_MerR-trunc (cd04762), HTH_17 (pfam12728), GIIM (pfam08388)

Seq: PMIS01000409.1 Acidimicrobiaceae bacterium isolate fen_685 73.20120600_E3D.21_contig_164037, whole genome shotgun sequence (3749 bp)
Overview 1 RT 1: 1583-3662 bp Neighborhood of RT #1 [1583, 3748] Zn_Tnp_IS1595 DDE_Tnp_IS1595 RVT-GII GIIM Feature: gene Location: 1583-1855 bp Feature: gene Location: 2100-3140 bp Feature: domain Description: Zn_Tnp_IS1595 Location: 2169-2295 bp Feature: domain Description: Zn_Tnp_IS1595 Location: 2 169-2 2 95 bp Feature: domain Description: DDE_Tnp_IS1595 Location: 2505-2940 bp Feature: domain Description: DDE_Tnp_IS1595 Location: 2 505-2 940 bp Feature: gene Location: 3251-3748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3263-3353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 63-3353 bp Feature: domain Description: GIIM Note: maturase Location: 3443-3662 bp Feature: domain Description: GIIM Note: maturase Location: 3443-3662 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Zn_Tnp_IS1595 (pfam12760), DDE_Tnp_IS1595 (pfam12762), RVT-GII, GIIM (pfam08388)

Seq: PMIS01000319.1 Acidimicrobiaceae bacterium isolate fen_685 73.20120600_E3D.21_contig_175718, whole genome shotgun sequence (3086 bp)
Overview 1 RT 1: 2-2188 bp Neighborhood of RT #1 [2, 2730] RVT-GII PinE Zn_ribbon_recom Feature: gene Location: 2-676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 482-674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 482-674 bp Feature: gene Location: 533-697 bp Feature: gene Location: 1030-2730 bp Feature: domain Description: PinE Location: 1069-1654 bp Feature: domain Description: PinE Location: 1069-1654 bp Feature: domain Description: Zn_ribbon_recom Location: 2026-2188 bp Feature: domain Description: Zn_ribbon_recom Location: 2026-2188 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PinE (COG1961), Zn_ribbon_recom (pfam13408)

Seq: PMIS01000280.1 Acidimicrobiaceae bacterium isolate fen_685 73.20120600_E3D.21_contig_21038, whole genome shotgun sequence (6667 bp)
Overview 1 RT 1: 3-3575 bp Neighborhood of RT #1 [3, 3787] RVT-GII GIIM Methyltransf_25 Feature: gene Location: 3-1223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 288-948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 288-94 8 bp Feature: domain Description: GIIM Note: maturase Location: 1038-1224 bp Feature: domain Description: GIIM Note: maturase Location: 1038-1224 bp Feature: gene Location: 1807-2733 bp Feature: gene Location: 3161-3787 bp Feature: domain Description: Methyltransf_25 Location: 3317-3575 bp Feature: domain Description: Methyltransf_25 Location: 3317-3575 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Methyltransf_25 (pfam13649)

Seq: PMIS01000144.1 Acidimicrobiaceae bacterium isolate fen_685 73.20120600_E3D.21_contig_23842, whole genome shotgun sequence (4446 bp)
Overview 1 RT 1: 291-4444 bp Neighborhood of RT #1 [291, 4444] RVT-GII GIIM COG5421 Feature: gene Location: 291-551 bp Feature: gene Location: 656-1900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 866-1526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 866-15 26 bp Feature: domain Description: GIIM Note: maturase Location: 1616-1835 bp Feature: domain Description: GIIM Note: maturase Location: 1616-1835 bp Feature: gene Location: 1926-3692 bp Feature: domain Description: COG5421 Location: 2391-3492 bp Feature: domain Description: COG5 421 Location: 2391-3492 bp Feature: gene Location: 3938-4444 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG5421 (Transposase )

Seq: PMIS01000062.1 Acidimicrobiaceae bacterium isolate fen_685 73.20120600_E3D.21_contig_427947, whole genome shotgun sequence (3632 bp)
Overview 1 RT 1: 784-3338 bp Neighborhood of RT #1 [784, 3412] ABC_MJ0796_LolCDE_FtsE RVT-GII GIIM Feature: gene Location: 784-1524 bp Feature: domain Description: ABC_MJ0796_LolCDE_FtsE Location: 856-1504 bp Feature: domain Description: ABC_MJ0796 _LolCDE_FtsE Location: 856 -1504 bp Feature: gene Location: 1673-1816 bp Feature: gene Location: 2159-3412 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2375-3035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2375-3035 bp Feature: domain Description: GIIM Note: maturase Location: 3116-3338 bp Feature: domain Description: GIIM Note: maturase Location: 3116 -3338 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_MJ0796_LolCDE_FtsE (cd03255), RVT-GII, GIIM (pfam08388)

Seq: PMIS01000118.1 Acidimicrobiaceae bacterium isolate fen_685 73.20120600_E3D.21_contig_74183, whole genome shotgun sequence (6920 bp)
Overview 1 RT 1: 2858-6002 bp Neighborhood of RT #1 [2858, 6002] rve_3 RVT-GII GIIM Feature: gene Location: 2858-3025 bp Feature: gene Location: 3385-3756 bp Feature: domain Description: rve_3 Location: 3469-3646 bp Feature: domain Description: rve_3 Location: 3469-3646 bp Feature: gene Location: 4393-5295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4639-5281 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4639-5281 bp Feature: gene Location: 5350-5658 bp Feature: domain Description: GIIM Note: maturase Location: 5356-5581 bp Feature: domain Description: GIIM Note: maturase Location: 5356-5581 bp Feature: gene Location: 5697-6002 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve_3 (pfam13683), RVT-GII, GIIM (pfam08388)