myRT

myRT report for GCA_003159325.1_20120700_S3X

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Seq: PLOY01000531.1 Acidobacteriaceae bacterium isolate bog_401 73.20120700_S3X.21_contig_11257, whole genome shotgun sequence (10021 bp)
Overview 1 RT 1: 507-9589 bp Neighborhood of RT #1 [507, 9714] acidobact_VWFA ArabFuran-catal NPCBM_assoc LTD RVT-GII GIIM Cupin_2 Feature: gene Location: 507-2399 bp Feature: domain Description: acidobact_VWFA Location: 654-1707 bp Feature: domain Description: acidobact_VWFA Location: 654-1 707 bp Feature: gene Location: 3223-6687 bp Feature: domain Description: ArabFuran-catal Location: 3349-4321 bp Feature: domain Description: ArabFuran-catal Location: 3349-4321 bp Feature: domain Description: NPCBM_assoc Location: 4387-4630 bp Feature: domain Description: NPCBM_assoc Location: 4387-4630 bp Feature: domain Description: LTD Location: 4687-4975 bp Feature: domain Description: LTD Location: 4687-4975 bp Feature: gene Location: 7016-7969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7031-7535 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7031 -7535 bp Feature: domain Description: GIIM Note: maturase Location: 7616-7712 bp Feature: domain Description: GIIM Note: maturase Location: 761 6-771 2 bp Feature: gene Location: 8207-8380 bp Feature: gene Location: 9115-9714 bp Feature: domain Description: Cupin_2 Location: 9412-9589 bp Feature: domain Description: Cupin_2 Location: 941 2-9589 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT acidobact_VWFA (TIGR03436), ArabFuran-catal (pfam09206), NPCBM_assoc (pfam10633), LTD (pfam00932), RVT-GII, GIIM (pfam08388), Cupin_2 (pfam07883)

Seq: PLOY01000053.1 Acidobacteriaceae bacterium isolate bog_401 73.20120700_S3X.21_contig_12696, whole genome shotgun sequence (7589 bp)
Overview 1 RT 1: 4934-7587 bp Neighborhood of RT #1 [4934, 7587] RVT_N RVT-GII GIIM TnpB_IS66 Feature: gene Location: 4934-5071 bp Feature: gene Location: 5135-5335 bp Feature: gene Location: 5347-6831 bp Feature: domain Description: RVT_N Location: 5398-5641 bp Feature: domain Description: RVT_N Location: 5398-5641 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5686-6331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5686-6331 bp Feature: domain Description: GIIM Note: maturase Location: 6388-6619 bp Feature: domain Description: GIIM Note: maturase Location: 6388-6619 bp Feature: gene Location: 6705-7226 bp Feature: domain Description: TnpB_IS66 Location: 6948-7197 bp Feature: domain Description: TnpB_IS66 Location: 6948-7197 bp Feature: gene Location: 7303-7587 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TnpB_IS66 (pfam05717)

Seq: PLOY01000578.1 Acidobacteriaceae bacterium isolate bog_401 73.20120700_S3X.21_contig_1701, whole genome shotgun sequence (11996 bp)
Overview 1 RT 1: 7084-11539 bp Neighborhood of RT #1 [7084, 11539] TnpB_IS66 HTH_Tnp_1 RVT-GII GIIM DGQHR Feature: gene Location: 7084-7497 bp Feature: domain Description: TnpB_IS66 Location: 7135-7432 bp Feature: domain Description: TnpB_IS66 Location: 713 5-743 2 bp Feature: gene Location: 7494-7829 bp Feature: domain Description: HTH_Tnp_1 Location: 7554-7656 bp Feature: domain Description: HTH_Tnp_1 Location: 7554-7656 bp Feature: gene Location: 7979-9529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8495-9110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8495-9110 bp Feature: domain Description: GIIM Note: maturase Location: 9167-9371 bp Feature: domain Description: GIIM Note: maturase Location: 9167-93 71 bp Feature: gene Location: 9747-10208 bp Feature: domain Description: DGQHR Location: 9756-9984 bp Feature: domain Description: DGQHR Location: 9756-9984 bp Feature: gene Location: 10382-11539 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), HTH_Tnp_1 (pfam01527), RVT-GII, GIIM (pfam08388), DGQHR (TIGR03187)

Seq: PLOY01000275.1 Acidobacteriaceae bacterium isolate bog_401 73.20120700_S3X.21_contig_20473, whole genome shotgun sequence (12150 bp)
Overview 1 RT 1: 75-2344 bp Neighborhood of RT #1 [75, 2344] RVT-Retrons Feature: gene Location: 75-1013 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 243-777 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 24 3-777 bp Feature: gene Location: 1344-1559 bp Feature: gene Location: 2120-2344 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: PLOY01000034.1 Acidobacteriaceae bacterium isolate bog_401 73.20120700_S3X.21_contig_24308, whole genome shotgun sequence (6374 bp)
Overview 1 RT 1: 1-2817 bp Neighborhood of RT #1 [1, 2855] RVT-GII VirB10 Feature: gene Location: 1-1134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61-742 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61-742 bp Feature: gene Location: 1207-1497 bp Feature: gene Location: 1509-2855 bp Feature: domain Description: VirB10 Location: 2277-2817 bp Feature: domain Description: VirB10 Location: 2277-2817 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, VirB10 (COG2948)

Seq: PLOY01000029.1 Acidobacteriaceae bacterium isolate bog_401 73.20120700_S3X.21_contig_4719, whole genome shotgun sequence (7204 bp)
Overview 1 RT 1: 2-2571 bp Neighborhood of RT #1 [2, 2571] RVT-UNC Cas1_I-II-III Feature: gene Location: 2-1717 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 23-179 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 23-179 bp Feature: domain Description: Cas1_I-II-III Location: 719-1673 bp Feature: domain Description: Cas1_I-II-III Location: 719-16 73 bp Feature: gene Location: 1806-2249 bp Feature: gene Location: 2215-2571 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR/RVT-DGRs/RVT-GII(RVT-UNC), Cas1_I-II-III (cl00656)

Seq: PLOY01000248.1 Acidobacteriaceae bacterium isolate bog_401 73.20120700_S3X.21_contig_7316, whole genome shotgun sequence (48701 bp)
Overview 1 RT 1: 25320-33848 bp Neighborhood of RT #1 [25320, 33848] ADOP RVT-GII Pro-peptidase_S53 Peptidases_S53 Big_3_5 Big_3_5 Big_3_5 Feature: gene Location: 25320-25487 bp Feature: gene Location: 25701-28130 bp Feature: domain Description: ADOP Location: 25713-28128 bp Feature: domain Description: ADOP Location: 257 13-28128 bp Feature: gene Location: 28408-28788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28672-28765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2867 2-287 65 bp Feature: gene Location: 29034-32795 bp Feature: domain Description: Pro-peptidase_S53 Location: 29400-29763 bp Feature: domain Description: Pro-peptidase_S53 Location: 29400-297 63 bp Feature: domain Description: Peptidases_S53 Location: 29856-31218 bp Feature: domain Description: Peptidases_S53 Location: 29856-31218 bp Feature: domain Description: Big_3_5 Location: 31299-31596 bp Feature: domain Description: Big_3_5 Location: 31299-31596 bp Feature: domain Description: Big_3_5 Location: 31629-31911 bp Feature: domain Description: Big_3_5 Location: 31629-31911 bp Feature: domain Description: Big_3_5 Location: 32004-32235 bp Feature: domain Description: Big_3_5 Location: 32004-32235 bp Feature: gene Location: 33234-33848 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ADOP (TIGR03434), RVT-GII, Pro-peptidase_S53 (cl07889), Peptidases_S53 (cd04056), Big_3_5 (pfam16640)

Seq: PLOY01000121.1 Acidobacteriaceae bacterium isolate bog_401 73.20120700_S3X.21_contig_7454, whole genome shotgun sequence (32529 bp)
Overview 1 RT 1: 8524-13398 bp Neighborhood of RT #1 [8524, 13398] TraI_TIGR PRK13826 TraI_TIGR TraI_TIGR TraI_TIGR DNA_polB_like1_exo RVT-Retrons HipB Feature: gene Location: 8524-11109 bp Feature: domain Description: TraI_TIGR Location: 8527-9694 bp Feature: domain Description: TraI_TIGR Location: 8 527-9694 bp Feature: domain Description: PRK13826 Location: 9694-9943 bp Feature: domain Description: PRK138 26 Location: 9694-9943 bp Feature: domain Description: TraI_TIGR Location: 9949-10258 bp Feature: domain Description: TraI_TIGR Location: 9949-10258 bp Feature: domain Description: TraI_TIGR Location: 10267-10513 bp Feature: domain Description: TraI_TIGR Location: 10267-10513 bp Feature: domain Description: TraI_TIGR Location: 10540-11068 bp Feature: domain Description: TraI_TIGR Location: 10540-11068 bp Feature: gene Location: 11245-11916 bp Feature: domain Description: DNA_polB_like1_exo Location: 11293-11788 bp Feature: domain Description: DNA_polB_like1_exo Location: 11293-1178 8 bp Feature: gene Location: 11913-12818 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12054-12576 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12054-12576 bp Feature: gene Location: 12802-13113 bp Feature: domain Description: HipB Location: 12811-13015 bp Feature: domain Description: HipB Location: 128 11-13015 bp Feature: gene Location: 13144-13398 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraI_TIGR (TIGR02760), PRK13826 (Dtr system oriT relaxase; Provisional), DNA_polB_like1_exo (cd05782), RVT-Retrons, HipB (COG1396)

Seq: PLOY01000010.1 Acidobacteriaceae bacterium isolate bog_401 73.20120700_S3X.21_contig_7532, whole genome shotgun sequence (4658 bp)
Overview 1 RT 1: 736-3518 bp Neighborhood of RT #1 [736, 3518] AbiTii RVT-Retrons HTH_XRE Feature: gene Location: 736-1044 bp Feature: gene Location: 1041-1967 bp Feature: domain Description: AbiTii Location: 1047-1584 bp Feature: domain Description: AbiTii Location: 1047-1584 bp Feature: gene Location: 1990-2955 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2185-2713 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2185-2713 bp Feature: gene Location: 2909-3244 bp Feature: domain Description: HTH_XRE Location: 2924-3083 bp Feature: domain Description: HTH_XRE Location: 29 24-3083 bp Feature: gene Location: 3309-3518 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiTii (pfam18864), RVT-Retrons, HTH_XRE (smart00530)

Seq: PLOY01000267.1 Acidobacteriaceae bacterium isolate bog_401 73.20120700_S3X.21_contig_7582, whole genome shotgun sequence (5509 bp)
Overview 1 RT 1: 1-3312 bp Neighborhood of RT #1 [1, 4007] RVT-GII GT4_mannosyltransferase-like CarboxypepD_reg Feature: gene Location: 1-942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 496-898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 496-898 bp Feature: gene Location: 1286-2623 bp Feature: domain Description: GT4_mannosyltransferase-like Location: 1418-2528 bp Feature: domain Description: GT4_mannosyltransferase-like Location: 1418-2528 bp Feature: gene Location: 2751-4007 bp Feature: domain Description: CarboxypepD_reg Location: 3087-3312 bp Feature: domain Description: CarboxypepD_reg Location: 3087-3312 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GT4_mannosyltransferase-like (cd03822), CarboxypepD_reg (pfam13620)

Seq: PLOY01000021.1 Acidobacteriaceae bacterium isolate bog_401 73.20120700_S3X.21_contig_8959, whole genome shotgun sequence (7205 bp)
Overview 1 RT 1: 2981-7204 bp Neighborhood of RT #1 [2981, 7204] acidobact_VWFA COG4818 RVT-GII GIIM Feature: gene Location: 2981-4090 bp Feature: domain Description: acidobact_VWFA Location: 3035-4070 bp Feature: domain Description: acidobact_VWFA Location: 3035-4070 bp Feature: gene Location: 4637-5005 bp Feature: domain Description: COG4818 Location: 4664-4997 bp Feature: domain Description: COG4818 Location: 4664-4997 bp Feature: gene Location: 5467-6861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5797-6415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5797-6415 bp Feature: domain Description: GIIM Note: maturase Location: 6466-6691 bp Feature: domain Description: GIIM Note: maturase Location: 6466-6691 bp Feature: gene Location: 7034-7204 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT acidobact_VWFA (TIGR03436), COG4818 (Uncharacterized membrane protein ), RVT-GII, GIIM (pfam08388)