myRT

myRT report for GCA_003159445.1_20120700_S3D

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Seq: PLPG01000004.1 Acidimicrobiaceae bacterium isolate bog_794 73.20120700_S3D.57_contig_4646, whole genome shotgun sequence (20608 bp)
Overview 1 RT 1: 14696-20038 bp Neighborhood of RT #1 [14696, 20038] Phage_int_SAM_1 INT_RitB_C_like Phage_int_SAM_1 INT_RitC_C_like RVT-GII PinE Zn_ribbon_recom HTH_17 HTH_17 Feature: gene Location: 14696-15679 bp Feature: domain Description: Phage_int_SAM_1 Location: 14786-14963 bp Feature: domain Description: Phage_int_SAM_1 Location: 1 4786-1 4963 bp Feature: domain Description: INT_RitB_C_like Location: 15029-15614 bp Feature: domain Description: INT_RitB_C_like Location: 1 5029-1 561 4 bp Feature: gene Location: 15669-16673 bp Feature: domain Description: Phage_int_SAM_1 Location: 15714-15957 bp Feature: domain Description: Phage_int_SAM_1 Location: 1 571 4-1 5957 bp Feature: domain Description: INT_RitC_C_like Location: 16044-16593 bp Feature: domain Description: INT_RitC_C_like Location: 1 6044-1 6593 bp Feature: gene Location: 16692-17102 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16698-17004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6698-1 7004 bp Feature: gene Location: 17368-19620 bp Feature: domain Description: PinE Location: 17419-18004 bp Feature: domain Description: PinE Location: 1 741 9-1 8004 bp Feature: domain Description: Zn_ribbon_recom Location: 18358-18523 bp Feature: domain Description: Zn_ribbon_recom Location: 1 8358-1 8523 bp Feature: domain Description: HTH_17 Location: 19213-19324 bp Feature: domain Description: HTH_1 7 Location: 1 921 3-1 9324 bp Feature: domain Description: HTH_17 Location: 19426-19537 bp Feature: domain Description: HTH_1 7 Location: 1 9426-1 9537 bp Feature: gene Location: 19688-20038 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_1 (pfam02899), INT_RitB_C_like (cd00797), INT_RitC_C_like (cd01182), RVT-GII, PinE (COG1961), Zn_ribbon_recom (pfam13408), HTH_17 (pfam12728)