myRT

myRT report for GCA_003159645.1_20120700_S3D

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Seq: PLPY01000157.1 Verrucomicrobia subdivision 3 bacterium isolate bog_1461 73.20120700_S3D.10_contig_1421, whole genome shotgun sequence (63042 bp)
Overview 1 RT 1: 3507-6309 bp Neighborhood of RT #1 [3507, 6359] RVT-GII GIIM KdpC Feature: gene Location: 3507-3761 bp Feature: gene Location: 3801-3932 bp Feature: gene Location: 4199-5083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4205-4559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4205-4559 bp Feature: domain Description: GIIM Note: maturase Location: 4619-4847 bp Feature: domain Description: GIIM Note: maturase Location: 461 9-4847 bp Feature: gene Location: 5119-5289 bp Feature: gene Location: 5736-6359 bp Feature: domain Description: KdpC Location: 5754-6309 bp Feature: domain Description: KdpC Location: 5754-6309 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), KdpC (pfam02669)

Seq: PLPY01000012.1 Verrucomicrobia subdivision 3 bacterium isolate bog_1461 73.20120700_S3D.10_contig_568, whole genome shotgun sequence (5073 bp)
Overview 1 RT 1: 2760-4704 bp Neighborhood of RT #1 [2760, 4940] RVT_N RVT-GII GIIM Feature: gene Location: 2760-3044 bp Feature: gene Location: 3138-3386 bp Feature: gene Location: 3432-4940 bp Feature: RT Description: RVT_N Location: 3483-3726 bp Feature: RT Description: RVT_N Location: 3483-372 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3771-4416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3771-4416 bp Feature: domain Description: GIIM Note: maturase Location: 4473-4704 bp Feature: domain Description: GIIM Note: maturase Location: 4473-4704 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: PLPY01000045.1 Verrucomicrobia subdivision 3 bacterium isolate bog_1461 73.20120700_S3D.10_contig_6685, whole genome shotgun sequence (22262 bp)
Overview 1 RT 1: 18063-21105 bp Neighborhood of RT #1 [18063, 21105] HTH_XRE RVT_N RVT-GII GIIM Feature: gene Location: 18063-18248 bp Feature: gene Location: 18280-18681 bp Feature: domain Description: HTH_XRE Location: 18505-18667 bp Feature: domain Description: HTH_XRE Location: 18505-18667 bp Feature: gene Location: 18812-20320 bp Feature: RT Description: RVT_N Location: 18863-19106 bp Feature: RT Description: RVT_N Location: 18863 -19106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19151-19796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19151-19796 bp Feature: domain Description: GIIM Note: maturase Location: 19856-20084 bp Feature: domain Description: GIIM Note: maturase Location: 19856-20084 bp Feature: gene Location: 20405-20677 bp Feature: gene Location: 20920-21105 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)