myRT

myRT report for GCA_003159855.1_20120700_S3D

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Seq: PLPS01000043.1 Granulicella sp. isolate bog_392 73.20120700_S3D.28_contig_12558, whole genome shotgun sequence (4359 bp)
Overview 1 RT 1: 256-3702 bp Neighborhood of RT #1 [256, 3770] RVT-GII GIIM DUF3999 DUF2339 DUF2339 Feature: gene Location: 256-1572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 541-1183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 541 -1 1 83 bp Feature: domain Description: GIIM Note: maturase Location: 1267-1483 bp Feature: domain Description: GIIM Note: maturase Location: 1 267-1 483 bp Feature: gene Location: 1906-3168 bp Feature: domain Description: DUF3999 Location: 2230-2434 bp Feature: domain Description: DUF3999 Location: 2230-2434 bp Feature: gene Location: 3165-3770 bp Feature: domain Description: DUF2339 Location: 3471-3630 bp Feature: domain Description: DUF2339 Location: 3471 -3630 bp Feature: domain Description: DUF2339 Location: 3639-3702 bp Feature: domain Description: DUF2339 Location: 3639-3702 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF3999 (pfam13163), DUF2339 (pfam10101)

Seq: PLPS01000031.1 Granulicella sp. isolate bog_392 73.20120700_S3D.28_contig_28393, whole genome shotgun sequence (8951 bp)
Overview 1 RT 1: 3-2966 bp Neighborhood of RT #1 [3, 2966] RVT-Retrons Feature: gene Location: 3-194 bp Feature: gene Location: 327-482 bp Feature: gene Location: 513-1469 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 624-1209 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 62 4-12 09 bp Feature: gene Location: 1466-2401 bp Feature: gene Location: 2655-2966 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: PLPS01000055.1 Granulicella sp. isolate bog_392 73.20120700_S3D.28_contig_31533, whole genome shotgun sequence (6761 bp)
Overview 1 RT 1: 3770-6316 bp Neighborhood of RT #1 [3770, 6316] HTH_28 RVT-GII GIIM Feature: gene Location: 3770-4117 bp Feature: domain Description: HTH_28 Location: 3836-3974 bp Feature: domain Description: HTH_28 Location: 3 83 6-3 974 bp Feature: gene Location: 4236-4379 bp Feature: gene Location: 4437-5762 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4725-5385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4725-53 85 bp Feature: domain Description: GIIM Note: maturase Location: 5460-5664 bp Feature: domain Description: GIIM Note: maturase Location: 5460-5664 bp Feature: gene Location: 6044-6316 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_28 (pfam13518), RVT-GII, GIIM (pfam08388)

Seq: PLPS01000025.1 Granulicella sp. isolate bog_392 73.20120700_S3D.28_contig_8419, whole genome shotgun sequence (19393 bp)
Overview 1 RT 1: 4629-10838 bp Neighborhood of RT #1 [4629, 10838] RVT-UG13 PLDc_N_DEXD_a PRK04914 PRK04914 Feature: gene Location: 4629-5045 bp Feature: gene Location: 5063-5263 bp Feature: gene Location: 5325-7082 bp Feature: RT Description: RVT-UG13 Note: UG13 RT Location: 5679-6135 bp Feature: RT Description: RVT-UG13 Note: UG13 RT Location: 5679-6135 bp Feature: gene Location: 7352-10504 bp Feature: domain Description: PLDc_N_DEXD_a Location: 7388-7961 bp Feature: domain Description: PLDc_N_DEXD_a Location: 7388-7961 bp Feature: domain Description: PRK04914 Location: 8216-9161 bp Feature: domain Description: PRK04 914 Location: 8216-9161 bp Feature: domain Description: PRK04914 Location: 9626-10109 bp Feature: domain Description: PRK04 914 Location: 9626-10109 bp Feature: gene Location: 10506-10838 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG13, PLDc_N_DEXD_a (cd09179), PRK04914 (RNA polymerase-associated protein RapA)