myRT

myRT report for GCA_003160145.1_20120700_S2D

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Seq: PLQO01000080.1 Acidimicrobiaceae bacterium isolate bog_780 73.20120700_S2D.6_contig_10303, whole genome shotgun sequence (4262 bp)
Overview 1 RT 1: 171-4170 bp Neighborhood of RT #1 [171, 4170] RVT-GII GIIM HTH_Hin_like HTH_Hin_like Feature: gene Location: 171-314 bp Feature: gene Location: 657-1910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 873-1533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 873-1 533 bp Feature: domain Description: GIIM Note: maturase Location: 1614-1836 bp Feature: domain Description: GIIM Note: maturase Location: 1 61 4-1 836 bp Feature: gene Location: 2135-3631 bp Feature: domain Description: HTH_Hin_like Location: 2288-2375 bp Feature: domain Description: HTH_Hin_like Location: 2288-2375 bp Feature: domain Description: HTH_Hin_like Location: 2438-2555 bp Feature: domain Description: HTH_Hin_like Location: 2438-2555 bp Feature: gene Location: 3628-4170 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Hin_like (cd00569), RVT-GII, GIIM (pfam08388)

Seq: PLQO01000126.1 Acidimicrobiaceae bacterium isolate bog_780 73.20120700_S2D.6_contig_15845, whole genome shotgun sequence (3256 bp)
Overview 1 RT 1: 1575-3255 bp Neighborhood of RT #1 [1575, 3254] COG2361 RVT-GII Feature: gene Location: 1575-1901 bp Feature: domain Description: COG2361 Location: 1584-1887 bp Feature: domain Description: COG2 361 Location: 1584-1887 bp Feature: gene Location: 2305-2565 bp Feature: gene Location: 2670-3254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2880-3255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 880-32 55 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2361 (Uncharacterized conserved protein, contains HEPN domain ), RVT-GII

Seq: PLQO01000047.1 Acidimicrobiaceae bacterium isolate bog_780 73.20120700_S2D.6_contig_4212, whole genome shotgun sequence (12443 bp)
Overview 1 RT 1: 2146-8802 bp Neighborhood of RT #1 [2146, 8810] nicotinamidase_related PRK08264 RVT-GII DegQ Feature: gene Location: 2146-2706 bp Feature: domain Description: nicotinamidase_related Location: 2179-2596 bp Feature: domain Description: nicotinamidase_related Location: 2179-2596 bp Feature: gene Location: 3112-3459 bp Feature: domain Description: PRK08264 Location: 3124-3409 bp Feature: domain Description: PRK08264 Location: 3 124-3 409 bp Feature: gene Location: 4912-5589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5173-5554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5173 -5554 bp Feature: gene Location: 6314-6511 bp Feature: gene Location: 6636-8810 bp Feature: domain Description: DegQ Location: 7899-8802 bp Feature: domain Description: DegQ Location: 7899-8802 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT nicotinamidase_related (cd01014), PRK08264 (SDR family oxidoreductase), RVT-GII, DegQ (pfam08181)

Seq: PLQO01000048.1 Acidimicrobiaceae bacterium isolate bog_780 73.20120700_S2D.6_contig_5304, whole genome shotgun sequence (10984 bp)
Overview 1 RT 1: 8278-10954 bp Neighborhood of RT #1 [8278, 10983] RVT-GII GIIM AAAA Feature: gene Location: 8278-8616 bp Feature: gene Location: 9049-9246 bp Feature: gene Location: 9455-10552 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9530-10157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9530-10157 bp Feature: domain Description: GIIM Note: maturase Location: 10247-10460 bp Feature: domain Description: GIIM Note: maturase Location: 1024 7-104 60 bp Feature: gene Location: 10663-10983 bp Feature: domain Description: AAAA Location: 10687-10954 bp Feature: domain Description: AAAA Location: 10687-10954 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAAA (COG1672), RVT-GII, GIIM (pfam08388)

Seq: PLQO01000064.1 Acidimicrobiaceae bacterium isolate bog_780 73.20120700_S2D.6_contig_9993, whole genome shotgun sequence (3752 bp)
Overview 1 RT 1: 138-2986 bp Neighborhood of RT #1 [138, 3075] IS5 IS5 RVT-GII GIIM Feature: gene Location: 138-1625 bp Feature: domain Description: IS5 Location: 267-696 bp Feature: domain Description: IS5 Location: 267-696 bp Feature: domain Description: IS5 Location: 1011-1512 bp Feature: domain Description: IS5 Location: 1011-15 12 bp Feature: gene Location: 1822-3075 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2017-2677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2017-2677 bp Feature: domain Description: GIIM Note: maturase Location: 2767-2986 bp Feature: domain Description: GIIM Note: maturase Location: 2767-2986 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), RVT-GII, GIIM (pfam08388)