myRT

myRT report for GCA_003160215.1_20120700_S1X

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Seq: PLQW01000264.1 Acidobacteriaceae bacterium isolate bog_382 73.20120700_S1X.44_contig_1080, whole genome shotgun sequence (20197 bp)
Overview 1 RT 1: 12477-18473 bp Neighborhood of RT #1 [12477, 18532] COG3975 Y2_Tnp RVT-GII PAS_3 GDB1 Glyco_hydro_100 Feature: gene Location: 12477-14486 bp Feature: domain Description: COG3975 Location: 12738-14400 bp Feature: domain Description: COG3975 Location: 1 2738-1 4400 bp Feature: gene Location: 14938-15309 bp Feature: domain Description: Y2_Tnp Location: 14944-15112 bp Feature: domain Description: Y2_Tnp Location: 1 4944-1 51 1 2 bp Feature: gene Location: 15858-16769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16062-16662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6062-1 6662 bp Feature: gene Location: 16948-17322 bp Feature: domain Description: PAS_3 Location: 17074-17212 bp Feature: domain Description: PAS_3 Location: 1 7074-1 721 2 bp Feature: gene Location: 17342-18532 bp Feature: domain Description: GDB1 Location: 17438-17801 bp Feature: domain Description: GDB1 Location: 1 7438-1 7801 bp Feature: domain Description: Glyco_hydro_100 Location: 18020-18473 bp Feature: domain Description: Glyco_hydro_1 00 Location: 1 8020-1 8473 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3975 (Predicted metalloprotease, contains C-terminal PDZ domain ), Y2_Tnp (pfam04986), RVT-GII, PAS_3 (pfam08447), GDB1 (COG3408), Glyco_hydro_100 (pfam12899)

Seq: PLQW01000056.1 Acidobacteriaceae bacterium isolate bog_382 73.20120700_S1X.44_contig_6834, whole genome shotgun sequence (5104 bp)
Overview 1 RT 1: 2-3162 bp Neighborhood of RT #1 [2, 3251] RVT-GII GIIM MPP_ACP5 Feature: gene Location: 2-1222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 182-842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 182 -842 bp Feature: domain Description: GIIM Note: maturase Location: 914-1127 bp Feature: domain Description: GIIM Note: maturase Location: 914-112 7 bp Feature: gene Location: 1257-1445 bp Feature: gene Location: 1827-3251 bp Feature: domain Description: MPP_ACP5 Location: 2340-3162 bp Feature: domain Description: MPP_ACP5 Location: 2 340-3162 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MPP_ACP5 (cd07378), RVT-GII, GIIM (pfam08388)

Seq: PLQW01000006.1 Acidobacteriaceae bacterium isolate bog_382 73.20120700_S1X.44_contig_700, whole genome shotgun sequence (42303 bp)
Overview 1 RT 1: 37171-41303 bp Neighborhood of RT #1 [37171, 41353] HugZ SRAP RVT_N RVT-GII GIIM SRAP DUF2784 Feature: gene Location: 37171-37962 bp Feature: domain Description: HugZ Location: 37258-37957 bp Feature: domain Description: HugZ Location: 3 7258-3 7957 bp Feature: gene Location: 38060-38407 bp Feature: domain Description: SRAP Location: 38066-38369 bp Feature: domain Description: SRAP Location: 3 8066-3 83 69 bp Feature: gene Location: 38544-40019 bp Feature: RT Description: RVT_N Location: 38589-38832 bp Feature: RT Description: RVT_N Location: 3 8589-3 883 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38877-39525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 8877-3 9525 bp Feature: domain Description: GIIM Note: maturase Location: 39582-39813 bp Feature: domain Description: GIIM Note: maturase Location: 3 9582-3 9813 bp Feature: gene Location: 40504-40932 bp Feature: domain Description: SRAP Location: 40507-40831 bp Feature: domain Description: SRAP Location: 40507-4083 1 bp Feature: gene Location: 40955-41353 bp Feature: domain Description: DUF2784 Location: 40997-41303 bp Feature: domain Description: DUF2784 Location: 40997-413 03 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HugZ (COG0748), SRAP (pfam02586), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF2784 (pfam10861)

Seq: PLQW01000150.1 Acidobacteriaceae bacterium isolate bog_382 73.20120700_S1X.44_contig_9925, whole genome shotgun sequence (41874 bp)
Overview 1 RT 1: 6766-10082 bp Neighborhood of RT #1 [6766, 10082] Fer4 Fer4 RVT-GII PRK08197 Feature: gene Location: 6766-7017 bp Feature: domain Description: Fer4 Location: 6775-6838 bp Feature: domain Description: Fer4 Location: 6775-6838 bp Feature: domain Description: Fer4 Location: 6886-6949 bp Feature: domain Description: Fer4 Location: 6886-694 9 bp Feature: gene Location: 7135-7269 bp Feature: gene Location: 7326-8081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7575-8070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7575-8070 bp Feature: gene Location: 8424-9647 bp Feature: domain Description: PRK08197 Location: 8430-9564 bp Feature: domain Description: PRK08197 Location: 84 30-9564 bp Feature: gene Location: 9783-10082 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Fer4 (pfam00037), RVT-GII, PRK08197 (threonine synthase; Validated)