myRT

myRT report for GCA_003160385.1_20120700_S1X

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Seq: PLRF01000144.1 Acidobacteriaceae bacterium isolate bog_378 73.20120700_S1X.19_contig_1338, whole genome shotgun sequence (56156 bp)
Overview 1 RT 1: 51812-56096 bp Neighborhood of RT #1 [51812, 56110] RVT-GII HTH_17 Feature: gene Location: 51812-52264 bp Feature: gene Location: 52322-52609 bp Feature: gene Location: 52935-54410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53349-54039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53349-54039 bp Feature: gene Location: 54520-55671 bp Feature: gene Location: 55859-56110 bp Feature: domain Description: HTH_17 Location: 55955-56096 bp Feature: domain Description: HTH_1 7 Location: 55955-56096 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_17 (pfam12728)

Seq: PLRF01000112.1 Acidobacteriaceae bacterium isolate bog_378 73.20120700_S1X.19_contig_1925, whole genome shotgun sequence (9055 bp)
Overview 1 RT 1: 139-9054 bp Neighborhood of RT #1 [139, 9054] RVT-GII GIIM Cyt_bd_oxida_I Cyt_bd_oxida_I Cytochrome_CBB3 Cytochrome_CBB3 RVT-GII RVT-GII Feature: gene Location: 139-1437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 430-1030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 430-1030 bp Feature: domain Description: GIIM Note: maturase Location: 1144-1354 bp Feature: domain Description: GIIM Note: maturase Location: 1144-1354 bp Feature: gene Location: 1436-1594 bp Feature: gene Location: 1700-1951 bp Feature: gene Location: 2249-3367 bp Feature: gene Location: 3389-4888 bp Feature: domain Description: Cyt_bd_oxida_I Location: 3437-3995 bp Feature: domain Description: Cyt_bd_oxida_I Location: 3437-3995 bp Feature: domain Description: Cyt_bd_oxida_I Location: 4172-4352 bp Feature: domain Description: Cyt_bd_oxida_I Location: 4172 -4352 bp Feature: domain Description: Cytochrome_CBB3 Location: 4442-4634 bp Feature: domain Description: Cytochrome_CBB3 Location: 4442 -4634 bp Feature: domain Description: Cytochrome_CBB3 Location: 4679-4871 bp Feature: domain Description: Cytochrome_CBB3 Location: 4679-4871 bp Feature: gene Location: 5377-6864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5869-6481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5869-6481 bp Feature: gene Location: 7003-7275 bp Feature: gene Location: 7512-8834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7767-8460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7767-8460 bp Feature: gene Location: 8929-9054 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Cyt_bd_oxida_I (pfam01654), Cytochrome_CBB3 (pfam13442)

Seq: PLRF01000216.1 Acidobacteriaceae bacterium isolate bog_378 73.20120700_S1X.19_contig_3546, whole genome shotgun sequence (34242 bp)
Overview 1 RT 1: 11280-17253 bp Neighborhood of RT #1 [11280, 17261] RsbU RVT-GII GIIM PvlArgDC PRK10517 Feature: gene Location: 11280-12695 bp Feature: domain Description: RsbU Location: 11943-12675 bp Feature: domain Description: RsbU Location: 11943 -12675 bp Feature: gene Location: 12706-12897 bp Feature: gene Location: 13048-13602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13054-13210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 054-13 210 bp Feature: domain Description: GIIM Note: maturase Location: 13288-13504 bp Feature: domain Description: GIIM Note: maturase Location: 13 288-13 504 bp Feature: gene Location: 13851-14468 bp Feature: domain Description: PvlArgDC Location: 13899-14379 bp Feature: domain Description: PvlArgDC Location: 13 899-143 79 bp Feature: gene Location: 14571-17261 bp Feature: domain Description: PRK10517 Location: 14694-17253 bp Feature: domain Description: PRK10517 Location: 14694-17253 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RsbU (COG2208), RVT-GII, GIIM (pfam08388), PvlArgDC (pfam01862), PRK10517 (magnesium-transporting P-type ATPase MgtA)

Seq: PLRF01000035.1 Acidobacteriaceae bacterium isolate bog_378 73.20120700_S1X.19_contig_3734, whole genome shotgun sequence (47803 bp)
Overview 1 RT 1: 41657-47651 bp Neighborhood of RT #1 [41657, 47651] GT87 RVT-GII GIIM RVT-GII Feature: gene Location: 41657-43027 bp Feature: domain Description: GT87 Location: 41975-42677 bp Feature: domain Description: GT87 Location: 4 1975-4 2677 bp Feature: gene Location: 43129-43722 bp Feature: gene Location: 44796-46124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45105-45729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 5105-4 5729 bp Feature: domain Description: GIIM Note: maturase Location: 45828-46038 bp Feature: domain Description: GIIM Note: maturase Location: 4 5828-4 6038 bp Feature: gene Location: 46117-46317 bp Feature: gene Location: 46342-47361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46597-47284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 6597-4 7284 bp Feature: gene Location: 47403-47651 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GT87 (pfam09594), RVT-GII, GIIM (pfam08388)

Seq: PLRF01000071.1 Acidobacteriaceae bacterium isolate bog_378 73.20120700_S1X.19_contig_3790, whole genome shotgun sequence (4212 bp)
Overview 1 RT 1: 2-4054 bp Neighborhood of RT #1 [2, 4209] RVT-GII GIIM PL-6 PL-6 Feature: gene Location: 2-331 bp Feature: gene Location: 336-749 bp Feature: gene Location: 810-1691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1152-1686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115 2-1686 bp Feature: gene Location: 1728-2192 bp Feature: domain Description: GIIM Note: maturase Location: 1818-2043 bp Feature: domain Description: GIIM Note: maturase Location: 1818-2043 bp Feature: gene Location: 3166-4209 bp Feature: domain Description: PL-6 Location: 3358-3508 bp Feature: domain Description: PL-6 Location: 335 8-35 08 bp Feature: domain Description: PL-6 Location: 3733-4054 bp Feature: domain Description: PL-6 Location: 3733-405 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PL-6 (cl19188)