myRT

myRT report for GCA_003160635.1_20120700_P3D

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Seq: PMLV01000112.1 Acidimicrobiaceae bacterium isolate palsa_740 73.20120700_P3D.127_contig_19406, whole genome shotgun sequence (18780 bp)
Overview 1 RT 1: 15268-18216 bp Neighborhood of RT #1 [15268, 18701] Transposase_20 RVT_N RVT-GII GIIM Feature: gene Location: 15268-15420 bp Feature: gene Location: 15597-15968 bp Feature: domain Description: Transposase_20 Location: 15624-15870 bp Feature: domain Description: Transposase_20 Location: 1 5624-1 5870 bp Feature: gene Location: 16890-18701 bp Feature: RT Description: RVT_N Location: 16977-17211 bp Feature: RT Description: RVT_N Location: 1 6977-1 721 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17274-17931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 7274-1 7931 bp Feature: domain Description: GIIM Note: maturase Location: 17985-18216 bp Feature: domain Description: GIIM Note: maturase Location: 1 7985-1 821 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Transposase_20 (pfam02371), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: PMLV01000299.1 Acidimicrobiaceae bacterium isolate palsa_740 73.20120700_P3D.127_contig_300274, whole genome shotgun sequence (5617 bp)
Overview 1 RT 1: 3478-5497 bp Neighborhood of RT #1 [3478, 5616] RVT-GII Feature: gene Location: 3478-3690 bp Feature: gene Location: 3702-4298 bp Feature: gene Location: 5212-5616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5290-5497 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 90-5497 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PMLV01000024.1 Acidimicrobiaceae bacterium isolate palsa_740 73.20120700_P3D.127_contig_395133, whole genome shotgun sequence (4272 bp)
Overview 1 RT 1: 2-4094 bp Neighborhood of RT #1 [2, 4225] PIN_Pae0151-like RVT_N RVT-GII GIIM RimL Feature: gene Location: 2-319 bp Feature: domain Description: PIN_Pae0151-like Location: 11-314 bp Feature: domain Description: PIN_Pae0151-like Location: 11-3 14 bp Feature: gene Location: 624-980 bp Feature: gene Location: 985-2772 bp Feature: RT Description: RVT_N Location: 1072-1309 bp Feature: RT Description: RVT_N Location: 1072-13 09 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1369-2026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 69-2026 bp Feature: domain Description: GIIM Note: maturase Location: 2080-2311 bp Feature: domain Description: GIIM Note: maturase Location: 2080-23 11 bp Feature: gene Location: 3512-4225 bp Feature: domain Description: RimL Location: 3587-4094 bp Feature: domain Description: RimL Location: 3 587-4094 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RimL (COG1670), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: PMLV01000066.1 Acidimicrobiaceae bacterium isolate palsa_740 73.20120700_P3D.127_contig_71929, whole genome shotgun sequence (5525 bp)
Overview 1 RT 1: 21-5524 bp Neighborhood of RT #1 [21, 5524] Resolvase Recombinase Zn_ribbon_recom COG3905 RVT-GII GIIM RVT-GII Feature: gene Location: 21-2264 bp Feature: domain Description: Resolvase Location: 33-474 bp Feature: domain Description: Resolvase Location: 33-4 74 bp Feature: domain Description: Recombinase Location: 558-924 bp Feature: domain Description: Recombinase Location: 558-924 bp Feature: domain Description: Zn_ribbon_recom Location: 963-1152 bp Feature: domain Description: Zn_ribbon_recom Location: 963-1152 bp Feature: gene Location: 2378-2710 bp Feature: domain Description: COG3905 Location: 2582-2702 bp Feature: domain Description: COG3905 Location: 2582-2702 bp Feature: gene Location: 2857-3297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2860-3106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2860-3106 bp Feature: domain Description: GIIM Note: maturase Location: 3196-3295 bp Feature: domain Description: GIIM Note: maturase Location: 3196-3295 bp Feature: gene Location: 3663-5132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4071-4761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 071-4 761 bp Feature: gene Location: 5233-5394 bp Feature: gene Location: 5396-5524 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), COG3905 (Predicted transcriptional regulator ), RVT-GII, GIIM (pfam08388)

Seq: PMLV01000160.1 Acidimicrobiaceae bacterium isolate palsa_740 73.20120700_P3D.127_contig_930390, whole genome shotgun sequence (3143 bp)
Overview 1 RT 1: 61-2636 bp Neighborhood of RT #1 [61, 3007] DDE_Tnp_1 RVT-GII Feature: gene Location: 61-1449 bp Feature: domain Description: DDE_Tnp_1 Location: 448-1159 bp Feature: domain Description: DDE_Tnp_1 Location: 448-115 9 bp Feature: gene Location: 1655-3007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1937-2636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1937-2636 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: PMLV01000266.1 Acidimicrobiaceae bacterium isolate palsa_740 73.20120700_P3D.127_contig_93401, whole genome shotgun sequence (14992 bp)
Overview 1 RT 1: 8673-14163 bp Neighborhood of RT #1 [8673, 14189] DUF4760 RVT_N RVT-GII GIIM Phage_int_SAM_1 INT_RitA_C_like INT_RitB_C_like Feature: gene Location: 8673-9005 bp Feature: domain Description: DUF4760 Location: 8787-8997 bp Feature: domain Description: DUF476 0 Location: 8787-8997 bp Feature: gene Location: 9026-9160 bp Feature: gene Location: 10055-11809 bp Feature: RT Description: RVT_N Location: 10142-10379 bp Feature: RT Description: RVT_N Location: 10142-10379 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10439-11096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10439-11096 bp Feature: domain Description: GIIM Note: maturase Location: 11147-11381 bp Feature: domain Description: GIIM Note: maturase Location: 11147-11381 bp Feature: gene Location: 12049-13266 bp Feature: domain Description: Phage_int_SAM_1 Location: 12391-12631 bp Feature: domain Description: Phage_int_SAM_1 Location: 12391-126 31 bp Feature: domain Description: INT_RitA_C_like Location: 12724-13216 bp Feature: domain Description: INT_RitA_C_like Location: 12724-13216 bp Feature: gene Location: 13263-14189 bp Feature: domain Description: INT_RitB_C_like Location: 13578-14163 bp Feature: domain Description: INT_RitB_C_like Location: 13578-1416 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Phage_int_SAM_1 (pfam02899), INT_RitA_C_like (cd01188), INT_RitB_C_like (cd00797), DUF4760 (pfam15956)