myRT

myRT report for GCA_003160665.1_20120600_E2D

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Seq: PMJZ01000241.1 Acidimicrobiaceae bacterium isolate fen_677 73.20120600_E2D.19_contig_19727, whole genome shotgun sequence (7035 bp)
Overview 1 RT 1: 2384-5147 bp Neighborhood of RT #1 [2384, 6862] rve_3 RVT-GII GIIM HTH_Hin_like HTH_Hin_like Feature: gene Location: 2384-2692 bp Feature: domain Description: rve_3 Location: 2405-2582 bp Feature: domain Description: rve_3 Location: 2405-2582 bp Feature: gene Location: 2876-3019 bp Feature: gene Location: 3362-4615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3578-4238 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3578-4238 bp Feature: domain Description: GIIM Note: maturase Location: 4319-4541 bp Feature: domain Description: GIIM Note: maturase Location: 431 9-4541 bp Feature: gene Location: 4727-6862 bp Feature: domain Description: HTH_Hin_like Location: 4880-4967 bp Feature: domain Description: HTH_Hin_like Location: 4880-4967 bp Feature: domain Description: HTH_Hin_like Location: 5030-5147 bp Feature: domain Description: HTH_Hin_like Location: 5030-51 47 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve_3 (pfam13683), RVT-GII, GIIM (pfam08388), HTH_Hin_like (cd00569)

Seq: PMJZ01000091.1 Acidimicrobiaceae bacterium isolate fen_677 73.20120600_E2D.19_contig_65697, whole genome shotgun sequence (2536 bp)
Overview 1 RT 1: 72-2470 bp Neighborhood of RT #1 [72, 2535] COG5421 RVT-GII GIIM Feature: gene Location: 72-1676 bp Feature: domain Description: COG5421 Location: 429-1473 bp Feature: domain Description: COG542 1 Location: 42 9-1473 bp Feature: gene Location: 1741-2535 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1747-2161 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1747-2 161 bp Feature: domain Description: GIIM Note: maturase Location: 2251-2470 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 51-2 470 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG5421 (Transposase )