myRT

myRT report for GCA_003160755.1_ASM316075v1

Download annotations/find similar RTs

Seq: QEXZ01000104.1 Methanomicrobiales archaeon isolate M5.MMPM, whole genome shotgun sequence (5753 bp)
Overview 1 RT 1: 3039-5744 bp Neighborhood of RT #1 [3039, 5752] PflA RVT-GII Feature: gene Location: 3039-4079 bp Feature: domain Description: PflA Location: 3204-4020 bp Feature: domain Description: PflA Location: 3204-4020 bp Feature: gene Location: 4109-4993 bp Feature: gene Location: 5318-5752 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5327-5744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5327-5744 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PflA (COG1180), RVT-GII

Seq: QEXZ01000185.1 Methanomicrobiales archaeon isolate M5.MMPM, whole genome shotgun sequence (3148 bp)
Overview 1 RT 1: 119-2878 bp Neighborhood of RT #1 [119, 3147] group_II_RT_mat RVT-GII GIIM COG5421 Feature: gene Location: 119-610 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 125-506 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 12 5-506 bp Feature: gene Location: 750-1769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 753-1383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 753-1383 bp Feature: domain Description: GIIM Note: maturase Location: 1464-1695 bp Feature: domain Description: GIIM Note: maturase Location: 1464-1695 bp Feature: gene Location: 1933-3147 bp Feature: domain Description: COG5421 Location: 2560-2878 bp Feature: domain Description: COG542 1 Location: 2 560-2 878 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII, GIIM (pfam08388), COG5421 (Transposase )

Seq: QEXZ01000231.1 Methanomicrobiales archaeon isolate M5.MMPM, whole genome shotgun sequence (2169 bp)
Overview 1 RT 1: 114-1421 bp Neighborhood of RT #1 [114, 1421] RVT-GII GIIM ATP-synt_Vo_Ao_c Feature: gene Location: 114-578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120-246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120-246 bp Feature: domain Description: GIIM Note: maturase Location: 294-516 bp Feature: domain Description: GIIM Note: maturase Location: 294-516 bp Feature: gene Location: 786-1127 bp Feature: domain Description: ATP-synt_Vo_Ao_c Location: 933-1113 bp Feature: domain Description: ATP-synt_Vo_Ao_c Location: 93 3 -1113 bp Feature: gene Location: 1152-1421 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), ATP-synt_Vo_Ao_c (cd18120)

Seq: QEXZ01000056.1 Methanomicrobiales archaeon isolate M5.MMPM, whole genome shotgun sequence (9639 bp)
Overview 1 RT 1: 117-4842 bp Neighborhood of RT #1 [117, 5129] Methyltransf_11 RVT_N RVT-GII GIIM HNHc HTH_32 rve Feature: gene Location: 117-836 bp Feature: domain Description: Methyltransf_11 Location: 363-645 bp Feature: domain Description: Methyltransf_11 Location: 363-64 5 bp Feature: gene Location: 1146-1505 bp Feature: gene Location: 1551-2564 bp Feature: domain Description: RVT_N Location: 1602-1848 bp Feature: domain Description: RVT_N Location: 1602-184 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1896-2538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1896-2538 bp Feature: gene Location: 2733-3473 bp Feature: domain Description: GIIM Note: maturase Location: 2739-2865 bp Feature: domain Description: GIIM Note: maturase Location: 2739-2865 bp Feature: domain Description: HNHc Note: nucleases Location: 3048-3198 bp Feature: domain Description: HNHc Note: nucleases Location: 304 8-3198 bp Feature: gene Location: 3867-5129 bp Feature: domain Description: HTH_32 Location: 4179-4401 bp Feature: domain Description: HTH_32 Location: 4 179-4 4 01 bp Feature: domain Description: rve Location: 4485-4842 bp Feature: domain Description: rve Location: 4 4 85-4 84 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Methyltransf_11 (pfam08241), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), HTH_32 (pfam13565), rve (pfam00665)