myRT

myRT report for GCA_003160835.1_20120700_E2X

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Seq: PMDH01000367.1 Myxococcales bacterium isolate fen_1134 73.20120700_E2X.34_contig_122122, whole genome shotgun sequence (13532 bp)
Overview 1 RT 1: 1589-4700 bp Neighborhood of RT #1 [1589, 4726] Avd_like DUF1566 RVT-DGRs DUF1566 DUF4160 Feature: gene Location: 1589-1987 bp Feature: domain Description: Avd_like Location: 1619-1928 bp Feature: domain Description: Avd_like Location: 1 61 9-1 928 bp Feature: gene Location: 2012-2248 bp Feature: domain Description: DUF1566 Location: 2141-2246 bp Feature: domain Description: DUF1 566 Location: 21 41 -2246 bp Feature: gene Location: 1938-3866 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2457-3186 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2457-31 86 bp Feature: gene Location: 3863-4327 bp Feature: domain Description: DUF1566 Location: 3986-4325 bp Feature: domain Description: DUF1 566 Location: 3986-4325 bp Feature: gene Location: 4478-4726 bp Feature: domain Description: DUF4160 Location: 4508-4700 bp Feature: domain Description: DUF41 60 Location: 4508-4700 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), DUF1566 (pfam07603), RVT-DGRs, DUF4160 (pfam13711)

Seq: PMDH01000334.1 Myxococcales bacterium isolate fen_1134 73.20120700_E2X.34_contig_18839, whole genome shotgun sequence (25485 bp)
Overview 1 RT 1: 17340-21814 bp Neighborhood of RT #1 [17340, 21912] HNHc RVT-GII GIIM AmtB Feature: gene Location: 17340-17690 bp Feature: gene Location: 17703-18257 bp Feature: domain Description: HNHc Note: nucleases Location: 17862-18021 bp Feature: domain Description: HNHc Note: nucleases Location: 17862 -1802 1 bp Feature: gene Location: 18879-20141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19083-19773 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19083-19773 bp Feature: domain Description: GIIM Note: maturase Location: 19845-20055 bp Feature: domain Description: GIIM Note: maturase Location: 19845-2 0055 bp Feature: gene Location: 20235-20438 bp Feature: gene Location: 20602-21912 bp Feature: domain Description: AmtB Location: 20605-21814 bp Feature: domain Description: AmtB Location: 2 0605-2 1814 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HNHc (smart00507), RVT-GII, GIIM (pfam08388), AmtB (COG0004)

Seq: PMDH01000015.1 Myxococcales bacterium isolate fen_1134 73.20120700_E2X.34_contig_352494, whole genome shotgun sequence (2907 bp)
Overview 1 RT 1: 3-2777 bp Neighborhood of RT #1 [3, 2905] RVT-GII GIIM TOMM_kin_cyc TPR TPR Feature: gene Location: 3-929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-507 bp Feature: domain Description: GIIM Note: maturase Location: 564-783 bp Feature: domain Description: GIIM Note: maturase Location: 564-783 bp Feature: gene Location: 1025-2905 bp Feature: domain Description: TOMM_kin_cyc Location: 1055-1676 bp Feature: domain Description: TOMM_kin_cyc Location: 1055-1676 bp Feature: domain Description: TPR Location: 2126-2423 bp Feature: domain Description: TPR Location: 2126-2423 bp Feature: domain Description: TPR Location: 2492-2777 bp Feature: domain Description: TPR Location: 2492-2777 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), TOMM_kin_cyc (TIGR03903), TPR (smart00028)

Seq: PMDH01000397.1 Myxococcales bacterium isolate fen_1134 73.20120700_E2X.34_contig_465717, whole genome shotgun sequence (4204 bp)
Overview 1 RT 1: 78-3166 bp Neighborhood of RT #1 [78, 3166] RVT-GII GIIM Feature: gene Location: 78-1490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 417-1035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 17-1035 bp Feature: domain Description: GIIM Note: maturase Location: 1089-1302 bp Feature: domain Description: GIIM Note: maturase Location: 1089-1302 bp Feature: gene Location: 2548-2706 bp Feature: gene Location: 2798-3166 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PMDH01000192.1 Myxococcales bacterium isolate fen_1134 73.20120700_E2X.34_contig_4896, whole genome shotgun sequence (43114 bp)
Overview 1 RT 1: 2531-8416 bp Neighborhood of RT #1 [2531, 8430] RVT-UG28b TIGR04141 Feature: gene Location: 2531-3355 bp Feature: gene Location: 3427-3561 bp Feature: gene Location: 3666-5507 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 4083-4767 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 4083-4767 bp Feature: gene Location: 5955-6752 bp Feature: gene Location: 6841-8430 bp Feature: domain Description: TIGR04141 Location: 6877-8416 bp Feature: domain Description: TIGR04141 Location: 6877-8416 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG28b, TIGR04141 (sporadically distributed protein, TIGR04141 family)