myRT

myRT report for GCA_003160955.1_20110600_S1D

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Seq: PMPL01000236.1 Acidobacteriaceae bacterium isolate bog_100 73.20110600_S1D.4_contig_14072, whole genome shotgun sequence (16352 bp)
Overview 1 RT 1: 1223-5426 bp Neighborhood of RT #1 [1223, 5437] RpsA RpsA PRK00087 RVT-UG16 zf-UBP RelB Feature: gene Location: 1223-1798 bp Feature: domain Description: RpsA Location: 1289-1730 bp Feature: domain Description: RpsA Location: 1 289-1 730 bp Feature: gene Location: 1839-2942 bp Feature: domain Description: RpsA Location: 1842-2337 bp Feature: domain Description: RpsA Location: 1 842-2337 bp Feature: domain Description: PRK00087 Location: 2475-2931 bp Feature: domain Description: PRK00087 Location: 2475-2931 bp Feature: gene Location: 2982-4499 bp Feature: RT Description: RVT-UG16 Note: UG16 RT Location: 3366-3771 bp Feature: RT Description: RVT-UG1 6 Note: UG1 6 RT Location: 3366-3771 bp Feature: gene Location: 4531-4791 bp Feature: domain Description: zf-UBP Location: 4597-4786 bp Feature: domain Description: zf-UBP Location: 4597-4786 bp Feature: gene Location: 5171-5437 bp Feature: domain Description: RelB Location: 5183-5426 bp Feature: domain Description: RelB Location: 51 83-5426 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RpsA (COG0539), PRK00087 (bifunctional 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/30S ribosomal protein S1), RVT-UG16, zf-UBP (pfam02148), RelB (pfam04221)

Seq: PMPL01000055.1 Acidobacteriaceae bacterium isolate bog_100 73.20110600_S1D.4_contig_23041, whole genome shotgun sequence (4772 bp)
Overview 1 RT 1: 912-4770 bp Neighborhood of RT #1 [912, 4770] MDR7 RVT-GII GIIM Feature: gene Location: 912-1178 bp Feature: gene Location: 1258-2262 bp Feature: domain Description: MDR7 Location: 1261-2257 bp Feature: domain Description: MDR7 Location: 12 61-2 2 57 bp Feature: gene Location: 2786-4090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3071-3710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3071-3710 bp Feature: domain Description: GIIM Note: maturase Location: 3791-4001 bp Feature: domain Description: GIIM Note: maturase Location: 3791-4001 bp Feature: gene Location: 4491-4634 bp Feature: gene Location: 4642-4770 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MDR7 (cd08276), RVT-GII, GIIM (pfam08388)

Seq: PMPL01000203.1 Acidobacteriaceae bacterium isolate bog_100 73.20110600_S1D.4_contig_25792, whole genome shotgun sequence (7085 bp)
Overview 1 RT 1: 266-3826 bp Neighborhood of RT #1 [266, 3826] MazE PRK09812 RVT-UG7 Feature: gene Location: 266-484 bp Feature: domain Description: MazE Location: 275-482 bp Feature: domain Description: MazE Location: 275-482 bp Feature: gene Location: 481-807 bp Feature: domain Description: PRK09812 Location: 487-805 bp Feature: domain Description: PRK09812 Location: 487-805 bp Feature: gene Location: 1019-2584 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 1403-1829 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 1403 -1829 bp Feature: gene Location: 2740-3495 bp Feature: gene Location: 3524-3826 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MazE (COG2336), PRK09812 (type II toxin-antitoxin system ChpB family toxin), RVT-UG7