myRT

myRT report for GCA_003161205.1_20110600_P3S

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Seq: PMOU01000636.1 Actinobacteria bacterium isolate palsa_462 73.20110600_P3S.21_contig_21826, whole genome shotgun sequence (15300 bp)
Overview 1 RT 1: 7985-14536 bp Neighborhood of RT #1 [7985, 15297] PRK12767 RVT-GII GH16_laminarinase_like RpoE Feature: gene Location: 7985-9130 bp Feature: domain Description: PRK12767 Location: 8327-8942 bp Feature: domain Description: PRK1 2767 Location: 8327-8942 bp Feature: gene Location: 9269-9619 bp Feature: gene Location: 9616-12627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10834-11368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0834-1 1 368 bp Feature: gene Location: 12878-13654 bp Feature: domain Description: GH16_laminarinase_like Location: 12989-13643 bp Feature: domain Description: GH1 6_laminarinase_like Location: 1 2989-1 3643 bp Feature: gene Location: 14029-15297 bp Feature: domain Description: RpoE Location: 14053-14536 bp Feature: domain Description: RpoE Location: 1 4053-1 4536 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GH16_laminarinase_like (cd08023), RpoE (COG3343), PRK12767 (carbamoyl phosphate synthase-like protein; Provisional), RVT-GII

Seq: PMOU01000069.1 Actinobacteria bacterium isolate palsa_462 73.20110600_P3S.21_contig_97234, whole genome shotgun sequence (4822 bp)
Overview 1 RT 1: 83-3305 bp Neighborhood of RT #1 [83, 3305] RVT-GII GIIM HTH_17 HTH_17 Feature: gene Location: 83-1486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 443-1094 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 443-1094 bp Feature: domain Description: GIIM Note: maturase Location: 1178-1409 bp Feature: domain Description: GIIM Note: maturase Location: 1178-1409 bp Feature: gene Location: 1116-2351 bp Feature: domain Description: HTH_17 Location: 1914-2028 bp Feature: domain Description: HTH_17 Location: 1914-2 02 8 bp Feature: domain Description: HTH_17 Location: 2127-2235 bp Feature: domain Description: HTH_17 Location: 2 12 7-2 2 35 bp Feature: gene Location: 3171-3305 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), RVT-GII, GIIM (pfam08388)