myRT

myRT report for GCA_003161275.1_20110600_P1M

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Seq: PMOO01000080.1 Acidimicrobiaceae bacterium isolate palsa_460 73.20110600_P1M.45_contig_211044, whole genome shotgun sequence (2683 bp)
Overview 1 RT 1: 1-2238 bp Neighborhood of RT #1 [1, 2238] RVT-GII group_II_RT_mat Feature: gene Location: 1-147 bp Feature: gene Location: 265-1551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 604-1138 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 604-1 1 38 bp Feature: gene Location: 1554-1946 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1728-1938 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 728-1 938 bp Feature: gene Location: 2026-2238 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416)

Seq: PMOO01000852.1 Acidimicrobiaceae bacterium isolate palsa_460 73.20110600_P1M.45_contig_22226, whole genome shotgun sequence (3978 bp)
Overview 1 RT 1: 254-3877 bp Neighborhood of RT #1 [254, 3975] RVT-GII GIIM RVT-GII GIIM HTH_17 Feature: gene Location: 254-1606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 581-1220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 581-12 2 0 bp Feature: domain Description: GIIM Note: maturase Location: 1304-1523 bp Feature: domain Description: GIIM Note: maturase Location: 1304-152 3 bp Feature: gene Location: 2239-3444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2425-3046 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 42 5-3046 bp Feature: domain Description: GIIM Note: maturase Location: 3127-3346 bp Feature: domain Description: GIIM Note: maturase Location: 312 7-3346 bp Feature: gene Location: 3269-3625 bp Feature: gene Location: 3622-3975 bp Feature: domain Description: HTH_17 Location: 3766-3877 bp Feature: domain Description: HTH_17 Location: 3766-3877 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_17 (pfam12728)

Seq: PMOO01000558.1 Acidimicrobiaceae bacterium isolate palsa_460 73.20110600_P1M.45_contig_22302, whole genome shotgun sequence (6217 bp)
Overview 1 RT 1: 79-5076 bp Neighborhood of RT #1 [79, 5076] INT_RitC_C_like RVT-GII TIR_2 7WD40 KOG0266 7WD40 WD40 KOG0263 KOG0266 Feature: gene Location: 79-528 bp Feature: domain Description: INT_RitC_C_like Location: 82-454 bp Feature: domain Description: INT_RitC_C_like Location: 82-454 bp Feature: gene Location: 530-1498 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 911-1439 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 911-143 9 bp Feature: gene Location: 2030-4723 bp Feature: domain Description: TIR_2 Location: 2105-2465 bp Feature: domain Description: TIR_2 Location: 2105-2465 bp Feature: domain Description: 7WD40 Location: 2954-3422 bp Feature: domain Description: 7WD40 Location: 2954-3 422 bp Feature: domain Description: KOG0266 Location: 3458-3773 bp Feature: domain Description: KOG0266 Location: 3 458-3 773 bp Feature: domain Description: 7WD40 Location: 3806-3974 bp Feature: domain Description: 7WD40 Location: 3 806-3 974 bp Feature: domain Description: WD40 Location: 4034-4112 bp Feature: domain Description: WD40 Location: 403 4-4112 bp Feature: domain Description: KOG0263 Location: 4163-4373 bp Feature: domain Description: KOG0263 Location: 4163 -43 73 bp Feature: domain Description: KOG0266 Location: 4391-4709 bp Feature: domain Description: KOG0266 Location: 43 91-4709 bp Feature: gene Location: 4936-5076 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_RitC_C_like (cd01182), RVT-GII, TIR_2 (pfam13676), 7WD40 (sd00039), KOG0266 (KOG0266, WD40 repeat-containing protein ), WD40 (smart00320), KOG0263 (KOG0263, Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) )

Seq: PMOO01000616.1 Acidimicrobiaceae bacterium isolate palsa_460 73.20110600_P1M.45_contig_46328, whole genome shotgun sequence (7638 bp)
Overview 1 RT 1: 3-1503 bp Neighborhood of RT #1 [3, 1503] RVT-GII Feature: gene Location: 3-884 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 411-885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 11-885 bp Feature: gene Location: 949-1080 bp Feature: gene Location: 1288-1503 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PMOO01000196.1 Acidimicrobiaceae bacterium isolate palsa_460 73.20110600_P1M.45_contig_55914, whole genome shotgun sequence (3457 bp)
Overview 1 RT 1: 1-3453 bp Neighborhood of RT #1 [1, 3455] PinE Zn_ribbon_recom RVT-GII RVT_N RVT-GII Feature: gene Location: 1-1281 bp Feature: domain Description: PinE Location: 76-664 bp Feature: domain Description: PinE Location: 76-664 bp Feature: domain Description: Zn_ribbon_recom Location: 1024-1192 bp Feature: domain Description: Zn_ribbon_recom Location: 1024-1192 bp Feature: gene Location: 1547-2209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1781-2183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1781-2183 bp Feature: gene Location: 2847-3455 bp Feature: domain Description: RVT_N Location: 2925-3171 bp Feature: domain Description: RVT_N Location: 2925 -3171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3222-3453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3222-345 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), Zn_ribbon_recom (pfam13408), RVT-GII, RVT_N (pfam13655)

Seq: PMOO01000099.1 Acidimicrobiaceae bacterium isolate palsa_460 73.20110600_P1M.45_contig_58106, whole genome shotgun sequence (3310 bp)
Overview 1 RT 1: 100-2571 bp Neighborhood of RT #1 [100, 2699] COG3547 RVT-GII GIIM Feature: gene Location: 100-1182 bp Feature: domain Description: COG3547 Location: 160-1015 bp Feature: domain Description: COG3547 Location: 16 0-1015 bp Feature: gene Location: 1266-2699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1587-2265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1587-226 5 bp Feature: domain Description: GIIM Note: maturase Location: 2343-2571 bp Feature: domain Description: GIIM Note: maturase Location: 2343-2571 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)