myRT

myRT report for GCA_003161295.1_20110600_S1M

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Seq: PMPP01000085.1 Verrucomicrobia subdivision 3 bacterium isolate bog_1374 73.20110600_S1M.13_contig_1234, whole genome shotgun sequence (2831 bp)
Overview 1 RT 1: 718-2826 bp Neighborhood of RT #1 [718, 2828] RVT_N RVT-GII GIIM Feature: gene Location: 718-915 bp Feature: gene Location: 939-1721 bp Feature: gene Location: 1566-2828 bp Feature: RT Description: RVT_N Location: 1617-1860 bp Feature: RT Description: RVT_N Location: 1 61 7-1 860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1905-2553 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 905-2553 bp Feature: domain Description: GIIM Note: maturase Location: 2613-2826 bp Feature: domain Description: GIIM Note: maturase Location: 261 3-2826 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: PMPP01000139.1 Verrucomicrobia subdivision 3 bacterium isolate bog_1374 73.20110600_S1M.13_contig_1529, whole genome shotgun sequence (24023 bp)
Overview 1 RT 1: 2980-5937 bp Neighborhood of RT #1 [2980, 5937] RVT_N RVT-GII GIIM HTH_XRE Feature: gene Location: 2980-3165 bp Feature: gene Location: 3293-3595 bp Feature: gene Location: 3680-5188 bp Feature: RT Description: RVT_N Location: 3731-3974 bp Feature: RT Description: RVT_N Location: 3731-3974 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4019-4664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4019-4664 bp Feature: domain Description: GIIM Note: maturase Location: 4724-4952 bp Feature: domain Description: GIIM Note: maturase Location: 472 4-4952 bp Feature: gene Location: 5319-5720 bp Feature: domain Description: HTH_XRE Location: 5544-5706 bp Feature: domain Description: HTH_XRE Location: 5544-5706 bp Feature: gene Location: 5752-5937 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HTH_XRE (smart00530)

Seq: PMPP01000091.1 Verrucomicrobia subdivision 3 bacterium isolate bog_1374 73.20110600_S1M.13_contig_4601, whole genome shotgun sequence (49217 bp)
Overview 1 RT 1: 42864-46301 bp Neighborhood of RT #1 [42864, 46301] KdpC RVT-GII GIIM Feature: gene Location: 42864-43487 bp Feature: domain Description: KdpC Location: 42882-43437 bp Feature: domain Description: KdpC Location: 42882-43 43 7 bp Feature: gene Location: 43934-44104 bp Feature: gene Location: 44140-45024 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44146-44500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44146-44500 bp Feature: domain Description: GIIM Note: maturase Location: 44560-44788 bp Feature: domain Description: GIIM Note: maturase Location: 44560-44788 bp Feature: gene Location: 45291-45422 bp Feature: gene Location: 46014-46301 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KdpC (pfam02669), RVT-GII, GIIM (pfam08388)

Seq: PMPP01000040.1 Verrucomicrobia subdivision 3 bacterium isolate bog_1374 73.20110600_S1M.13_contig_979, whole genome shotgun sequence (17522 bp)
Overview 1 RT 1: 15209-17153 bp Neighborhood of RT #1 [15209, 17389] RVT_N RVT-GII GIIM Feature: gene Location: 15209-15493 bp Feature: gene Location: 15587-15835 bp Feature: gene Location: 15881-17389 bp Feature: RT Description: RVT_N Location: 15932-16175 bp Feature: RT Description: RVT_N Location: 15932-16175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16220-16865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16220-16865 bp Feature: domain Description: GIIM Note: maturase Location: 16922-17153 bp Feature: domain Description: GIIM Note: maturase Location: 16922-17153 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)