myRT

myRT report for GCA_003161385.1_20110600_S1D

Download annotations/find similar RTs

Seq: PMPF01000016.1 Acidimicrobiaceae bacterium isolate bog_467 73.20110600_S1D.20_contig_34964, whole genome shotgun sequence (4991 bp)
Overview 1 RT 1: 628-3582 bp Neighborhood of RT #1 [628, 3611] RVT-GII Phage_int_SAM_1 INT_RitC_C_like INT_RitB_C_like Feature: gene Location: 628-1698 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 943-1621 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 943-1 621 bp Feature: gene Location: 1699-2691 bp Feature: domain Description: Phage_int_SAM_1 Location: 1738-1984 bp Feature: domain Description: Phage_int_SAM_1 Location: 1 738-1 984 bp Feature: domain Description: INT_RitC_C_like Location: 2071-2614 bp Feature: domain Description: INT_RitC_C_like Location: 2071 -261 4 bp Feature: gene Location: 2688-3611 bp Feature: domain Description: INT_RitB_C_like Location: 3006-3582 bp Feature: domain Description: INT_RitB_C_like Location: 3006-3582 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), INT_RitB_C_like (cd00797), RVT-GII

Seq: PMPF01000056.1 Acidimicrobiaceae bacterium isolate bog_467 73.20110600_S1D.20_contig_49796, whole genome shotgun sequence (9928 bp)
Overview 1 RT 1: 6836-9459 bp Neighborhood of RT #1 [6836, 9551] RpoE RVT-GII GIIM Feature: gene Location: 6836-7369 bp Feature: gene Location: 7366-7968 bp Feature: domain Description: RpoE Location: 7393-7861 bp Feature: domain Description: RpoE Location: 7393-7861 bp Feature: gene Location: 8079-9551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8529-9156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 852 9-9156 bp Feature: domain Description: GIIM Note: maturase Location: 9246-9459 bp Feature: domain Description: GIIM Note: maturase Location: 92 46-9459 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RpoE (COG3343), RVT-GII, GIIM (pfam08388)