myRT

myRT report for GCA_003161895.1_20100900_E3D

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Seq: PMNI01000409.1 Bacteroidales bacterium isolate fen_945 73.20100900_E3D.41_contig_14815, whole genome shotgun sequence (25172 bp)
Overview 1 RT 1: 13113-22102 bp Neighborhood of RT #1 [13113, 22158] OMP_RagA_SusC SusD RVT-GII RVT-GII FGGY_SHK_like Feature: gene Location: 13113-16337 bp Feature: domain Description: OMP_RagA_SusC Location: 13212-16332 bp Feature: domain Description: OMP_RagA_SusC Location: 1 321 2-1 6332 bp Feature: gene Location: 16363-18141 bp Feature: domain Description: SusD Location: 16483-17977 bp Feature: domain Description: SusD Location: 1 6483-1 7977 bp Feature: gene Location: 18811-19104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18919-19099 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 891 9-1 9099 bp Feature: gene Location: 19310-19696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19313-19538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 931 3-1 9538 bp Feature: gene Location: 20227-20643 bp Feature: gene Location: 20743-22158 bp Feature: domain Description: FGGY_SHK_like Location: 20809-22102 bp Feature: domain Description: FGGY_SHK_like Location: 20809-221 02 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OMP_RagA_SusC (TIGR04056), SusD (NF033071), RVT-GII, FGGY_SHK_like (cd07777)

Seq: PMNI01000039.1 Bacteroidales bacterium isolate fen_945 73.20100900_E3D.41_contig_20671, whole genome shotgun sequence (9241 bp)
Overview 1 RT 1: 134-4377 bp Neighborhood of RT #1 [134, 4377] RVT-GII GIIM CarbopepD_reg_2 Feature: gene Location: 134-379 bp Feature: gene Location: 453-641 bp Feature: gene Location: 723-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 936-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 936-1605 bp Feature: domain Description: GIIM Note: maturase Location: 1686-1899 bp Feature: domain Description: GIIM Note: maturase Location: 1686-1899 bp Feature: gene Location: 3224-3580 bp Feature: domain Description: CarbopepD_reg_2 Location: 3347-3569 bp Feature: domain Description: CarbopepD_reg_2 Location: 3347-3569 bp Feature: gene Location: 3661-4377 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), CarbopepD_reg_2 (pfam13715)

Seq: PMNI01000209.1 Bacteroidales bacterium isolate fen_945 73.20100900_E3D.41_contig_45422, whole genome shotgun sequence (21044 bp)
Overview 1 RT 1: 4330-11878 bp Neighborhood of RT #1 [4330, 11878] AbiJ_NTD3 Abi_C PLDc_unchar6 RVT-AbiP2 SIR2_2 DUF815 Feature: gene Location: 4330-5238 bp Feature: domain Description: AbiJ_NTD3 Location: 4342-4825 bp Feature: domain Description: AbiJ_NTD3 Location: 43 42-4825 bp Feature: domain Description: Abi_C Location: 4975-5218 bp Feature: domain Description: Abi_C Location: 4975-5218 bp Feature: gene Location: 5328-6065 bp Feature: domain Description: PLDc_unchar6 Location: 5370-5673 bp Feature: domain Description: PLDc_unchar6 Location: 53 70-5673 bp Feature: gene Location: 6136-7641 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 6559-7021 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 6559-7021 bp Feature: gene Location: 8454-11627 bp Feature: domain Description: SIR2_2 Location: 8781-9210 bp Feature: domain Description: SIR2_2 Location: 8781-9210 bp Feature: domain Description: DUF815 Location: 9561-9789 bp Feature: domain Description: DUF815 Location: 9561-9789 bp Feature: gene Location: 11684-11878 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiJ_NTD3 (pfam18860), Abi_C (pfam14355), PLDc_unchar6 (cd09176), RVT-AbiP2, SIR2_2 (pfam13289), DUF815 (pfam05673)