myRT

myRT report for GCA_003162365.1_20100900_E1D

Download annotations/find similar RTs

Seq: PMMD01000081.1 Nitrospiraceae bacterium isolate fen_1303 73.20100900_E1D.12_contig_2102, whole genome shotgun sequence (5302 bp)
Overview 1 RT 1: 970-5301 bp Neighborhood of RT #1 [970, 5301] Fer4_5 NapF Fer4 DMSOR_beta_like RVT-GII GIIM Feature: gene Location: 970-2487 bp Feature: domain Description: Fer4_5 Location: 1162-1276 bp Feature: domain Description: Fer4_5 Location: 1 1 62-1 276 bp Feature: domain Description: NapF Location: 1567-1693 bp Feature: domain Description: NapF Location: 1 567-1 693 bp Feature: domain Description: Fer4 Location: 1723-1771 bp Feature: domain Description: Fer4 Location: 1 723-1 771 bp Feature: domain Description: DMSOR_beta_like Location: 1924-2437 bp Feature: domain Description: DMSOR_beta_like Location: 1 924-2437 bp Feature: gene Location: 2614-2790 bp Feature: gene Location: 3243-4505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3453-4074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3453-4074 bp Feature: domain Description: GIIM Note: maturase Location: 4119-4329 bp Feature: domain Description: GIIM Note: maturase Location: 41 1 9-4329 bp Feature: gene Location: 4807-5001 bp Feature: gene Location: 5062-5301 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Fer4_5 (pfam12801), NapF (COG1145), Fer4 (pfam00037), DMSOR_beta_like (cd16374)

Seq: PMMD01000068.1 Nitrospiraceae bacterium isolate fen_1303 73.20100900_E1D.12_contig_40722, whole genome shotgun sequence (3777 bp)
Overview 1 RT 1: 107-3323 bp Neighborhood of RT #1 [107, 3358] RVT-GII CarbopepD_reg_2 DUF4015 Feature: gene Location: 107-787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110-365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110-365 bp Feature: gene Location: 1810-1959 bp Feature: gene Location: 2015-3358 bp Feature: domain Description: CarbopepD_reg_2 Location: 2171-2375 bp Feature: domain Description: CarbopepD_reg_2 Location: 2 171-2 375 bp Feature: domain Description: DUF4015 Location: 2396-3323 bp Feature: domain Description: DUF4015 Location: 2 396-332 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, CarbopepD_reg_2 (pfam13715), DUF4015 (pfam13200)

Seq: PMMD01000355.1 Nitrospiraceae bacterium isolate fen_1303 73.20100900_E1D.12_contig_94450, whole genome shotgun sequence (7474 bp)
Overview 1 RT 1: 4878-7045 bp Neighborhood of RT #1 [4878, 7473] WrbA RVT-GII Feature: gene Location: 4878-5549 bp Feature: domain Description: WrbA Location: 4881-5340 bp Feature: domain Description: WrbA Location: 4881-53 40 bp Feature: gene Location: 5609-5905 bp Feature: gene Location: 6097-7473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6352-7045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63 52-7045 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WrbA (COG0655), RVT-GII