myRT

myRT report for GCA_003162395.1_20110600_P1M

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Seq: PMON01000078.1 Acidimicrobiaceae bacterium isolate palsa_459 73.20110600_P1M.36_contig_3011, whole genome shotgun sequence (81036 bp)
Overview 1 RT 1: 51856-56521 bp Neighborhood of RT #1 [51856, 56521] DppB DppC RVT-GII GIIM Feature: gene Location: 51856-52854 bp Feature: domain Description: DppB Location: 51859-52840 bp Feature: domain Description: DppB Location: 51 859-52840 bp Feature: gene Location: 52860-53858 bp Feature: domain Description: DppC Location: 53013-53850 bp Feature: domain Description: DppC Location: 5301 3-53850 bp Feature: gene Location: 54160-54759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54262-54379 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54262-54379 bp Feature: domain Description: GIIM Note: maturase Location: 54457-54682 bp Feature: domain Description: GIIM Note: maturase Location: 54457-54682 bp Feature: gene Location: 54774-55073 bp Feature: gene Location: 56315-56521 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DppB (COG0601), DppC (COG1173), RVT-GII, GIIM (pfam08388)

Seq: PMON01000060.1 Acidimicrobiaceae bacterium isolate palsa_459 73.20110600_P1M.36_contig_4975, whole genome shotgun sequence (66379 bp)
Overview 1 RT 1: 3-5163 bp Neighborhood of RT #1 [3, 5198] INT_ICEBs1_C_like RVT-GII COG3651 Feature: gene Location: 3-257 bp Feature: domain Description: INT_ICEBs1_C_like Location: 12-132 bp Feature: domain Description: INT_ICEBs1_C_like Location: 12 -132 bp Feature: gene Location: 1638-2216 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1641-2019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1641-2 019 bp Feature: gene Location: 3246-3455 bp Feature: gene Location: 4806-5198 bp Feature: domain Description: COG3651 Location: 4812-5163 bp Feature: domain Description: COG3651 Location: 4812 -5163 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, INT_ICEBs1_C_like (cd01189)