myRT

myRT report for GCA_003162565.1_20100900_E3D

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Seq: PMNK01000025.1 Chloroflexi bacterium isolate fen_1018 73.20100900_E3D.5_contig_1306, whole genome shotgun sequence (7411 bp)
Overview 1 RT 1: 2587-6546 bp Neighborhood of RT #1 [2587, 6566] AIM24 GIIM RVT-GII YceI MarR Feature: gene Location: 2587-3294 bp Feature: domain Description: AIM24 Location: 2665-3286 bp Feature: domain Description: AIM24 Location: 2665-3286 bp Feature: gene Location: 3385-3780 bp Feature: domain Description: GIIM Note: maturase Location: 3400-3559 bp Feature: domain Description: GIIM Note: maturase Location: 3400-3559 bp Feature: gene Location: 3821-4555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3929-4517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3929-451 7 bp Feature: gene Location: 5261-5821 bp Feature: domain Description: YceI Location: 5267-5759 bp Feature: domain Description: YceI Location: 5267-5759 bp Feature: gene Location: 6144-6566 bp Feature: domain Description: MarR Location: 6180-6546 bp Feature: domain Description: MarR Location: 61 80-6546 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AIM24 (pfam01987), GIIM (pfam08388), RVT-GII, YceI (smart00867), MarR (pfam01047)

Seq: PMNK01000007.1 Chloroflexi bacterium isolate fen_1018 73.20100900_E3D.5_contig_4969, whole genome shotgun sequence (6201 bp)
Overview 1 RT 1: 301-6009 bp Neighborhood of RT #1 [301, 6086] COG1373 COG4951 SSL2 RVT-GII GIIM SSL2 Feature: gene Location: 301-1560 bp Feature: domain Description: COG1373 Location: 367-1543 bp Feature: domain Description: COG1373 Location: 367-1543 bp Feature: gene Location: 1705-3837 bp Feature: domain Description: COG4951 Location: 1828-2767 bp Feature: domain Description: COG4951 Location: 182 8-2 767 bp Feature: domain Description: SSL2 Location: 2878-3256 bp Feature: domain Description: SSL2 Location: 2 878-32 56 bp Feature: gene Location: 3834-4616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4155-4551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4155-4551 bp Feature: gene Location: 4687-5202 bp Feature: domain Description: GIIM Note: maturase Location: 4771-5005 bp Feature: domain Description: GIIM Note: maturase Location: 4771-5005 bp Feature: gene Location: 5274-6086 bp Feature: domain Description: SSL2 Location: 5328-6009 bp Feature: domain Description: SSL2 Location: 532 8-6009 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), SSL2 (COG1061)