myRT

myRT report for GCA_003162775.1_20120800_S3X

Download annotations/find similar RTs

Seq: PLUN01000137.1 Acidimicrobiaceae bacterium isolate bog_833 73.20120800_S3X.9_contig_12719, whole genome shotgun sequence (3756 bp)
Overview 1 RT 1: 154-3024 bp Neighborhood of RT #1 [154, 3113] IS5 IS5 RVT-GII GIIM Feature: gene Location: 154-1641 bp Feature: domain Description: IS5 Location: 283-712 bp Feature: domain Description: IS5 Location: 283-71 2 bp Feature: domain Description: IS5 Location: 1027-1528 bp Feature: domain Description: IS5 Location: 1 027-1 528 bp Feature: gene Location: 1860-3113 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2055-2715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2055-271 5 bp Feature: domain Description: GIIM Note: maturase Location: 2805-3024 bp Feature: domain Description: GIIM Note: maturase Location: 2805-3024 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), RVT-GII, GIIM (pfam08388)

Seq: PLUN01000042.1 Acidimicrobiaceae bacterium isolate bog_833 73.20120800_S3X.9_contig_1614, whole genome shotgun sequence (21524 bp)
Overview 1 RT 1: 16680-21363 bp Neighborhood of RT #1 [16680, 21473] HTH_Hin_like HTH_Hin_like RVT-GII GIIM rve_3 Feature: gene Location: 16680-16883 bp Feature: gene Location: 16995-19130 bp Feature: domain Description: HTH_Hin_like Location: 17148-17235 bp Feature: domain Description: HTH_Hin_like Location: 17148-172 35 bp Feature: domain Description: HTH_Hin_like Location: 17298-17415 bp Feature: domain Description: HTH_Hin_like Location: 172 98-17415 bp Feature: gene Location: 19242-20495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19458-20118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19458-2 0118 bp Feature: domain Description: GIIM Note: maturase Location: 20199-20421 bp Feature: domain Description: GIIM Note: maturase Location: 2 0199-2 042 1 bp Feature: gene Location: 20838-20981 bp Feature: gene Location: 21165-21473 bp Feature: domain Description: rve_3 Location: 21186-21363 bp Feature: domain Description: rve_3 Location: 2 1186-2 1363 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Hin_like (cd00569), RVT-GII, GIIM (pfam08388), rve_3 (pfam13683)

Seq: PLUN01000154.1 Acidimicrobiaceae bacterium isolate bog_833 73.20120800_S3X.9_contig_2299, whole genome shotgun sequence (10551 bp)
Overview 1 RT 1: 8271-10350 bp Neighborhood of RT #1 [8271, 10436] group_II_RT_mat RVT-GII GIIM Feature: gene Location: 8271-8609 bp Feature: gene Location: 9070-9675 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 9346-9556 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 93 46-9556 bp Feature: gene Location: 9570-10436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9576-9987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9576-9987 bp Feature: domain Description: GIIM Note: maturase Location: 10131-10350 bp Feature: domain Description: GIIM Note: maturase Location: 1013 1-103 50 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII, GIIM (pfam08388)

Seq: PLUN01000040.1 Acidimicrobiaceae bacterium isolate bog_833 73.20120800_S3X.9_contig_3626, whole genome shotgun sequence (5320 bp)
Overview 1 RT 1: 3-4858 bp Neighborhood of RT #1 [3, 5250] TPR_12 TPR_12 Transposase_20 RVT-GII RVT-GII RVT-GII Feature: gene Location: 3-884 bp Feature: domain Description: TPR_12 Location: 39-138 bp Feature: domain Description: TPR_12 Location: 39-138 bp Feature: domain Description: TPR_12 Location: 171-363 bp Feature: domain Description: TPR_12 Location: 171-363 bp Feature: gene Location: 976-1410 bp Feature: domain Description: Transposase_20 Location: 982-1165 bp Feature: domain Description: Transposase_20 Location: 982-1165 bp Feature: gene Location: 1761-2366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2256-2355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2256-2355 bp Feature: gene Location: 2717-4207 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3125-3815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3125-3815 bp Feature: gene Location: 4267-5250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4273-4858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 273-4 858 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR_12 (pfam13424), Transposase_20 (pfam02371), RVT-GII

Seq: PLUN01000118.1 Acidimicrobiaceae bacterium isolate bog_833 73.20120800_S3X.9_contig_4222, whole genome shotgun sequence (14581 bp)
Overview 1 RT 1: 5926-10059 bp Neighborhood of RT #1 [5926, 10169] RVT-GII PRK08264 nicotinamidase_related Feature: gene Location: 5926-6123 bp Feature: gene Location: 6207-6335 bp Feature: gene Location: 6848-7525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7109-7490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7109-7490 bp Feature: gene Location: 8856-9203 bp Feature: domain Description: PRK08264 Location: 8868-9153 bp Feature: domain Description: PRK08264 Location: 8868-915 3 bp Feature: gene Location: 9609-10169 bp Feature: domain Description: nicotinamidase_related Location: 9642-10059 bp Feature: domain Description: nicotinamidase_related Location: 9642-1005 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK08264 (SDR family oxidoreductase), nicotinamidase_related (cd01014)