myRT

myRT report for GCA_003162895.1_20120800_S3X

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Seq: PLUU01000292.1 Acidobacteriaceae bacterium isolate bog_444 73.20120800_S3X.17_contig_1339, whole genome shotgun sequence (6501 bp)
Overview 1 RT 1: 3098-6454 bp Neighborhood of RT #1 [3098, 6498] RVT-UNC Cas1_I-II-III Feature: gene Location: 3098-4108 bp Feature: gene Location: 4254-4697 bp Feature: gene Location: 4786-6498 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 4804-4960 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 4804-4960 bp Feature: domain Description: Cas1_I-II-III Location: 5500-6454 bp Feature: domain Description: Cas1 _I-II-III Location: 5500-6454 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR/RVT-DGRs/RVT-GII(RVT-UNC), Cas1_I-II-III (cl00656)

Seq: PLUU01000053.1 Acidobacteriaceae bacterium isolate bog_444 73.20120800_S3X.17_contig_13529, whole genome shotgun sequence (4871 bp)
Overview 1 RT 1: 70-1798 bp Neighborhood of RT #1 [70, 1798] RVT-GII GIIM Feature: gene Location: 70-1221 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 355-991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 355-991 bp Feature: domain Description: GIIM Note: maturase Location: 1066-1219 bp Feature: domain Description: GIIM Note: maturase Location: 1066-12 19 bp Feature: gene Location: 1223-1573 bp Feature: gene Location: 1580-1798 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PLUU01000113.1 Acidobacteriaceae bacterium isolate bog_444 73.20120800_S3X.17_contig_24579, whole genome shotgun sequence (3851 bp)
Overview 1 RT 1: 30-3470 bp Neighborhood of RT #1 [30, 3470] RVT-GII GIIM PinE Zn_ribbon_recom Feature: gene Location: 30-914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 309-525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 09-525 bp Feature: domain Description: GIIM Note: maturase Location: 612-837 bp Feature: domain Description: GIIM Note: maturase Location: 612-83 7 bp Feature: gene Location: 911-2995 bp Feature: domain Description: PinE Location: 950-1640 bp Feature: domain Description: PinE Location: 950-1640 bp Feature: domain Description: Zn_ribbon_recom Location: 1907-2084 bp Feature: domain Description: Zn_ribbon_recom Location: 1907-2084 bp Feature: gene Location: 3132-3470 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PinE (COG1961), Zn_ribbon_recom (pfam13408)

Seq: PLUU01000059.1 Acidobacteriaceae bacterium isolate bog_444 73.20120800_S3X.17_contig_3612, whole genome shotgun sequence (14321 bp)
Overview 1 RT 1: 3706-7845 bp Neighborhood of RT #1 [3706, 7845] DoxX_2 RVT-GII GIIM Feature: gene Location: 3706-4077 bp Feature: domain Description: DoxX_2 Location: 3727-4039 bp Feature: domain Description: DoxX_2 Location: 3727-4 039 bp Feature: gene Location: 4527-4775 bp Feature: gene Location: 5260-6627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5587-6202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5587-6202 bp Feature: domain Description: GIIM Note: maturase Location: 6256-6469 bp Feature: domain Description: GIIM Note: maturase Location: 6256-64 69 bp Feature: gene Location: 6812-7105 bp Feature: gene Location: 7129-7845 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DoxX_2 (pfam13564), RVT-GII, GIIM (pfam08388)

Seq: PLUU01000103.1 Acidobacteriaceae bacterium isolate bog_444 73.20120800_S3X.17_contig_4560, whole genome shotgun sequence (37814 bp)
Overview 1 RT 1: 11691-17514 bp Neighborhood of RT #1 [11691, 17684] MATE_MurJ_like CcmA RVT-GII DUF4372 DDE_Tnp_1 Feature: gene Location: 11691-13379 bp Feature: domain Description: MATE_MurJ_like Location: 11844-13092 bp Feature: domain Description: MATE_MurJ_like Location: 11844-13092 bp Feature: gene Location: 13648-14280 bp Feature: domain Description: CcmA Location: 13921-14224 bp Feature: domain Description: CcmA Location: 13921-14224 bp Feature: gene Location: 14485-15987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14914-15595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14914-15 5 95 bp Feature: gene Location: 16134-16289 bp Feature: gene Location: 16506-17684 bp Feature: domain Description: DUF4372 Location: 16524-16731 bp Feature: domain Description: DUF4372 Location: 165 24-16731 bp Feature: domain Description: DDE_Tnp_1 Location: 16884-17514 bp Feature: domain Description: DDE_Tnp_1 Location: 16884-175 14 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MATE_MurJ_like (cd13123), CcmA (COG4133), RVT-GII, DUF4372 (pfam14294), DDE_Tnp_1 (pfam01609)

Seq: PLUU01000273.1 Acidobacteriaceae bacterium isolate bog_444 73.20120800_S3X.17_contig_504, whole genome shotgun sequence (45005 bp)
Overview 1 RT 1: 4412-8806 bp Neighborhood of RT #1 [4412, 8806] Beta-lactamase DUF3471 RVT-Retrons PRK05479 Feature: gene Location: 4412-4705 bp Feature: gene Location: 4727-6208 bp Feature: domain Description: Beta-lactamase Location: 4985-5858 bp Feature: domain Description: Beta-lactamase Location: 4985-5858 bp Feature: domain Description: DUF3471 Location: 5924-6173 bp Feature: domain Description: DUF3471 Location: 5924-6 173 bp Feature: gene Location: 6417-7748 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6879-7521 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6 879-7521 bp Feature: gene Location: 7940-8140 bp Feature: domain Description: PRK05479 Location: 7943-8102 bp Feature: domain Description: PRK05479 Location: 7943-8102 bp Feature: gene Location: 8354-8806 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Beta-lactamase (pfam00144), DUF3471 (pfam11954), RVT-Retrons, PRK05479 (ketol-acid reductoisomerase; Provisional)