myRT

myRT report for GCA_003162995.1_20120800_S3M

Download annotations/find similar RTs

Seq: PLUZ01000086.1 Methylocapsa sp. isolate bog_942 73.20120800_S3M.30_contig_12444, whole genome shotgun sequence (2704 bp)
Overview 1 RT 1: 3-2692 bp Neighborhood of RT #1 [3, 2703] RVT-GII COG3920 Feature: gene Location: 3-470 bp Feature: gene Location: 1022-1318 bp Feature: gene Location: 1338-1937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1584-1872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 584-1 872 bp Feature: gene Location: 2112-2294 bp Feature: gene Location: 2503-2703 bp Feature: domain Description: COG3920 Location: 2563-2692 bp Feature: domain Description: COG3920 Location: 2563-2692 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG3920 (Two-component sensor histidine kinase, HisKA and HATPase domains )

Seq: PLUZ01000066.1 Methylocapsa sp. isolate bog_942 73.20120800_S3M.30_contig_16529, whole genome shotgun sequence (2570 bp)
Overview 1 RT 1: 2-2413 bp Neighborhood of RT #1 [2, 2568] DUF3363 RVT-GII GIIM Feature: gene Location: 2-439 bp Feature: gene Location: 450-1412 bp Feature: domain Description: DUF3363 Location: 507-1404 bp Feature: domain Description: DUF3363 Location: 507-1404 bp Feature: gene Location: 1639-2568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1642-2140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1642 -2 140 bp Feature: domain Description: GIIM Note: maturase Location: 2191-2413 bp Feature: domain Description: GIIM Note: maturase Location: 2 191-2 413 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3363 (pfam11843), RVT-GII, GIIM (pfam08388)

Seq: PLUZ01000146.1 Methylocapsa sp. isolate bog_942 73.20120800_S3M.30_contig_44357, whole genome shotgun sequence (4867 bp)
Overview 1 RT 1: 31-2038 bp Neighborhood of RT #1 [31, 2038] Rve RVT-GII GIIM RVT-CRISPR-like Feature: gene Location: 31-564 bp Feature: domain Description: Rve Location: 103-502 bp Feature: domain Description: Rve Location: 103 -502 bp Feature: gene Location: 622-804 bp Feature: gene Location: 815-1324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 821-956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 821-956 bp Feature: domain Description: GIIM Note: maturase Location: 1058-1256 bp Feature: domain Description: GIIM Note: maturase Location: 1058-1256 bp Feature: gene Location: 1327-1485 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1378-1483 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 13 78-1483 bp Feature: gene Location: 1616-1900 bp Feature: gene Location: 1907-2038 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), RVT-GII, GIIM (pfam08388), RVT-CRISPR